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    Wdr20 WD repeat domain 20 [ Mus musculus (house mouse) ]

    Gene ID: 69641, updated on 23-Jun-2021

    Summary

    Official Symbol
    Wdr20provided by MGI
    Official Full Name
    WD repeat domain 20provided by MGI
    Primary source
    MGI:MGI:1916891
    See related
    Ensembl:ENSMUSG00000037957
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Wdr2; Wdr20a; AI549910; 2310040A13Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 4.4), thymus adult (RPKM 3.0) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Wdr20 in Genome Data Viewer
    Location:
    12; 12 F1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (110701459..110770709)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (110735025..110804275)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (111976159..112033238)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53768 Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 Neighboring gene MOK protein kinase Neighboring gene RIKEN cDNA 4921507G05 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    WD repeat-containing protein 20
    Names
    WD repeat domain 20A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347428.2NP_001334357.1  WD repeat-containing protein 20 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK009711, BP753580
      Consensus CDS
      CCDS84002.1
      UniProtKB/TrEMBL
      Q9D721
      Related
      ENSMUSP00000141678.2, ENSMUST00000193053.6
    2. NM_001364272.1NP_001351201.1  WD repeat-containing protein 20 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL596265
      Conserved Domains (2) summary
      sd00039
      Location:113178
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:109274
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. NM_001364273.1NP_001351202.1  WD repeat-containing protein 20 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL596265
      Conserved Domains (2) summary
      sd00039
      Location:1277
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:8173
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    4. NM_027149.4NP_081425.2  WD repeat-containing protein 20 isoform 1

      See identical proteins and their annotated locations for NP_081425.2

      Status: VALIDATED

      Source sequence(s)
      AI303487, AK136417, BC064773
      Consensus CDS
      CCDS26173.1
      UniProtKB/TrEMBL
      Q3UWE6
      Related
      ENSMUSP00000093059.3, ENSMUST00000095410.8
      Conserved Domains (3) summary
      COG2319
      Location:147389
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:153218
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:149314
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      110701459..110770709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516203.4XP_006516266.1  WD repeat-containing protein 20 isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:153218
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:149314
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_006516204.4XP_006516267.1  WD repeat-containing protein 20 isoform X2

      Conserved Domains (2) summary
      sd00039
      Location:153218
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:149314
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. XM_036157607.1XP_036013500.1  WD repeat-containing protein 20 isoform X7

    4. XM_036157606.1XP_036013499.1  WD repeat-containing protein 20 isoform X7

    5. XM_006516205.4XP_006516268.1  WD repeat-containing protein 20 isoform X3

      Conserved Domains (2) summary
      sd00039
      Location:113178
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:109274
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    6. XM_036157605.1XP_036013498.1  WD repeat-containing protein 20 isoform X4

      Conserved Domains (2) summary
      sd00039
      Location:113178
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:109274
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    7. XM_030246901.1XP_030102761.1  WD repeat-containing protein 20 isoform X6

      Conserved Domains (2) summary
      sd00039
      Location:5086
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:47146
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    8. XM_011244170.4XP_011242472.1  WD repeat-containing protein 20 isoform X5

      See identical proteins and their annotated locations for XP_011242472.1

      Conserved Domains (2) summary
      sd00039
      Location:1277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:8173
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    9. XM_006516207.5XP_006516270.1  WD repeat-containing protein 20 isoform X6

      Conserved Domains (2) summary
      sd00039
      Location:5086
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:47146
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RNA

    1. XR_004937540.1 RNA Sequence

    2. XR_872718.3 RNA Sequence

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