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    Pcgf3 polycomb group ring finger 3 [ Mus musculus (house mouse) ]

    Gene ID: 69587, updated on 31-Jan-2019

    Summary

    Official Symbol
    Pcgf3provided by MGI
    Official Full Name
    polycomb group ring finger 3provided by MGI
    Primary source
    MGI:MGI:1916837
    See related
    Ensembl:ENSMUSG00000033623
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rnf3; DONG1; RNF3A; AI662857; E430039C14; 2310035N15Rik; D630042K08Rik
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 11.1), CNS E14 (RPKM 9.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Pcgf3 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (108461215..108503099)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (108890351..108932118)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34319 Neighboring gene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E Neighboring gene major facilitator superfamily domain containing 7A Neighboring gene ribosomal protein L34 pseudogene Neighboring gene complexin 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Transgenic (1) 
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA polymerase II regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    histone H2A-K119 monoubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    histone H2A-K119 monoubiquitination IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    inactivation of X chromosome by genetic imprinting IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    inactivation of X chromosome by genetic imprinting IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    PRC1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    PcG protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    PcG protein complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    PcG protein complex ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with X chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    polycomb group RING finger protein 3
    Names
    RING finger protein 3A
    ring finger protein 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172716.4NP_766304.2  polycomb group RING finger protein 3

      See identical proteins and their annotated locations for NP_766304.2

      Status: PROVISIONAL

      Source sequence(s)
      AC133896, AC158912
      Consensus CDS
      CCDS19512.1
      UniProtKB/Swiss-Prot
      Q8BTQ0
      Related
      ENSMUSP00000041790.5, ENSMUST00000046975.11
      Conserved Domains (2) summary
      pfam16207
      Location:171235
      RAWUL; RAWUL domain RING finger- and WD40-associated ubiquitin-like
      cd16735
      Location:1460
      RING-HC_PCGF3; RING finger found in polycomb group RING finger protein 3 (PCGF3) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      108461215..108503099
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535208.2XP_006535271.1  polycomb group RING finger protein 3 isoform X1

      Conserved Domains (2) summary
      pfam00097
      Location:1755
      zf-C3HC4; Zinc finger, C3HC4 type (RING finger)
      pfam16207
      Location:164224
      RAWUL; RAWUL domain RING finger- and WD40-associated ubiquitin-like
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