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    Rwdd2a RWD domain containing 2A [ Mus musculus (house mouse) ]

    Gene ID: 69519, updated on 17-Aug-2024

    Summary

    Official Symbol
    Rwdd2aprovided by MGI
    Official Full Name
    RWD domain containing 2Aprovided by MGI
    Primary source
    MGI:MGI:1916769
    See related
    Ensembl:ENSMUSG00000032417 AllianceGenome:MGI:1916769
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rwdd2; 1700030C20Rik
    Summary
    Orthologous to human RWDD2A (RWD domain containing 2A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 18.3), cerebellum adult (RPKM 6.4) and 8 other tissues See more
    Orthologs
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    Genomic context

    See Rwdd2a in Genome Data Viewer
    Location:
    9 E3.1; 9 46.58 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (86454041..86456952)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (86571988..86574899)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene sorting nexin 4 pseudogene Neighboring gene ubiquitin protein ligase E3D Neighboring gene DOP1 leucine zipper like protein A Neighboring gene STARR-positive B cell enhancer ABC_E9332 Neighboring gene phosphoglucomutase 3 Neighboring gene STARR-positive B cell enhancer ABC_E10572 Neighboring gene malic enzyme 1, NADP(+)-dependent, cytosolic Neighboring gene STARR-seq mESC enhancer starr_24835 Neighboring gene RIKEN cDNA A330041J22 gene Neighboring gene predicted gene, 22138

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Clone Names

    • MGC144625, MGC144626

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    RWD domain-containing protein 2A
    Names
    RWD domain containing 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145968.1NP_001139440.1  RWD domain-containing protein 2A

      See identical proteins and their annotated locations for NP_001139440.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AI848608, BC115692
      Consensus CDS
      CCDS23382.1
      UniProtKB/Swiss-Prot
      Q9D9S3
      UniProtKB/TrEMBL
      Q14BN8
      Related
      ENSMUSP00000137392.2, ENSMUST00000179212.3
      Conserved Domains (2) summary
      pfam05773
      Location:7130
      RWD; RWD domain
      pfam06544
      Location:160281
      DUF1115; Protein of unknown function (DUF1115)
    2. NM_001145969.1NP_001139441.1  RWD domain-containing protein 2A

      See identical proteins and their annotated locations for NP_001139441.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AI848608, AK006533, CJ149958, CN836837
      Consensus CDS
      CCDS23382.1
      UniProtKB/Swiss-Prot
      Q9D9S3
      UniProtKB/TrEMBL
      Q14BN8
      Related
      ENSMUSP00000139930.2, ENSMUST00000185566.7
      Conserved Domains (2) summary
      pfam05773
      Location:7130
      RWD; RWD domain
      pfam06544
      Location:160281
      DUF1115; Protein of unknown function (DUF1115)
    3. NM_027100.2NP_081376.2  RWD domain-containing protein 2A

      See identical proteins and their annotated locations for NP_081376.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AI848608, BC115691
      Consensus CDS
      CCDS23382.1
      UniProtKB/Swiss-Prot
      Q9D9S3
      UniProtKB/TrEMBL
      Q14BN8
      Related
      ENSMUSP00000034988.4, ENSMUST00000034988.10
      Conserved Domains (2) summary
      pfam05773
      Location:7130
      RWD; RWD domain
      pfam06544
      Location:160281
      DUF1115; Protein of unknown function (DUF1115)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      86454041..86456952
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)