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    Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [ Mus musculus (house mouse) ]

    Gene ID: 69192, updated on 23-Jun-2021

    Summary

    Official Symbol
    Dhx16provided by MGI
    Official Full Name
    DEAH (Asp-Glu-Ala-His) box polypeptide 16provided by MGI
    Primary source
    MGI:MGI:1916442
    See related
    Ensembl:ENSMUSG00000024422
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DBP; DBP2; Ddx16; mKIAA0577; 2410006N22Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 30.7), testis adult (RPKM 23.0) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Dhx16 in Genome Data Viewer
    Location:
    17; 17 B1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (36190657..36203562)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35879764..35892670)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (36016723..36029615)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene nurim (nuclear envelope membrane protein) Neighboring gene protein phosphatase 1, regulatory subunit 18 Neighboring gene RIKEN cDNA 2310061I04 gene Neighboring gene alpha tubulin acetyltransferase 1 Neighboring gene predicted gene 16279

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of U2-type precatalytic spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in intracellular anatomical structure IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
    Names
    DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 16
    NP_081263.2
    XP_006524936.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026987.2NP_081263.2  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

      See identical proteins and their annotated locations for NP_081263.2

      Status: VALIDATED

      Source sequence(s)
      AI853344, AK010431, BC138205, BU054791, CJ141265
      Consensus CDS
      CCDS28710.1
      UniProtKB/TrEMBL
      G3X8X0, Q921Y1, Q9CRI3
      Related
      ENSMUSP00000025292.9, ENSMUST00000025292.15
      Conserved Domains (2) summary
      PTZ00121
      Location:147410
      PTZ00121; MAEBL; Provisional
      COG1643
      Location:3771031
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      36190657..36203562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524873.1XP_006524936.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1

      Conserved Domains (2) summary
      PTZ00121
      Location:147410
      PTZ00121; MAEBL; Provisional
      COG1643
      Location:3771036
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

    RNA

    1. XR_003952176.2 RNA Sequence

    2. XR_876528.4 RNA Sequence

      Related
      ENSMUST00000174366.8
    3. XR_001782109.3 RNA Sequence

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