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    Dym dymeclin [ Mus musculus (house mouse) ]

    Gene ID: 69190, updated on 23-Jun-2021

    Summary

    Official Symbol
    Dymprovided by MGI
    Official Full Name
    dymeclinprovided by MGI
    Primary source
    MGI:MGI:1918480
    See related
    Ensembl:ENSMUSG00000035765
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810041M12Rik; 4933427L07Rik; C030019K18Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 9.1), cerebellum adult (RPKM 5.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Dym in Genome Data Viewer
    Location:
    18; 18 E3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75151768..75420037)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75018699..75286966)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (75178426..75446620)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene cDNA sequence BC031181 Neighboring gene predicted gene, 26202 Neighboring gene ribosomal protein L17 Neighboring gene predicted gene, 52344 Neighboring gene ATP synthase subunit d, mitochondrial pseudogene Neighboring gene high mobility group box 1 pseudogene Neighboring gene predicted gene, 46624 Neighboring gene RIKEN cDNA 2010010A06 gene Neighboring gene predicted gene 20544

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC18957

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in Golgi organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in Golgi organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in bone development ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027727.3NP_082003.1  dymeclin

      See identical proteins and their annotated locations for NP_082003.1

      Status: VALIDATED

      Source sequence(s)
      AC121511, AC125122, AC132385
      Consensus CDS
      CCDS29346.1
      UniProtKB/Swiss-Prot
      Q8CHY3
      Related
      ENSMUSP00000047054.8, ENSMUST00000039608.9
      Conserved Domains (1) summary
      pfam09742
      Location:1646
      Dymeclin; Dyggve-Melchior-Clausen syndrome protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      75151768..75420037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250593.2XP_030106453.1  dymeclin isoform X3

      Conserved Domains (1) summary
      pfam09742
      Location:1468
      Dymeclin; Dyggve-Melchior-Clausen syndrome protein
    2. XM_030250594.1XP_030106454.1  dymeclin isoform X4

      Conserved Domains (1) summary
      pfam09742
      Location:1701
      Dymeclin; Dyggve-Melchior-Clausen syndrome protein
    3. XM_006526216.4XP_006526279.1  dymeclin isoform X1

      Conserved Domains (1) summary
      pfam09742
      Location:1585
      Dymeclin; Dyggve-Melchior-Clausen syndrome protein
    4. XM_006526218.5XP_006526281.1  dymeclin isoform X2

      Conserved Domains (1) summary
      pfam09742
      Location:1488
      Dymeclin; Dyggve-Melchior-Clausen syndrome protein

    RNA

    1. XR_386014.5 RNA Sequence

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