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    Lzic leucine zipper and CTNNBIP1 domain containing [ Mus musculus (house mouse) ]

    Gene ID: 69151, updated on 31-Jan-2019

    Summary

    Official Symbol
    Lzicprovided by MGI
    Official Full Name
    leucine zipper and CTNNBIP1 domain containingprovided by MGI
    Primary source
    MGI:MGI:1916401
    See related
    Ensembl:ENSMUSG00000028990
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW047580; 1810030J04Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 12.1), limb E14.5 (RPKM 10.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Lzic in Genome Data Viewer
    Location:
    4; 4 E2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (149485205..149496668)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (148859442..148870777)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 11-2, pseudogene 2 Neighboring gene retinol binding protein 7, cellular Neighboring gene nicotinamide nucleotide adenylyltransferase 1 Neighboring gene transmembrame protein 274 Neighboring gene catenin beta interacting protein 1 Neighboring gene microRNA 5616 Neighboring gene calsyntenin 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    beta-catenin binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein LZIC
    Names
    leucine zipper and CTNNBIP1 domain-containing protein
    leucine zipper and ICAT homologous domain-containing protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356322.1NP_001343251.1  protein LZIC

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK146824, AW047580, BY146654, CN455726
      Conserved Domains (2) summary
      pfam06384
      Location:113188
      ICAT; Beta-catenin-interacting protein ICAT
      pfam04111
      Location:887
      APG6; Autophagy protein Apg6
    2. NM_026963.6NP_081239.1  protein LZIC

      See identical proteins and their annotated locations for NP_081239.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK146824, AW047580
      Consensus CDS
      CCDS18961.1
      UniProtKB/Swiss-Prot
      Q8K3C3
      Related
      ENSMUSP00000030842.7, ENSMUST00000030842.7
      Conserved Domains (2) summary
      pfam06384
      Location:113188
      ICAT; Beta-catenin-interacting protein ICAT
      pfam04111
      Location:887
      APG6; Autophagy protein Apg6

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      149485205..149496668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539153.3XP_006539216.1  protein LZIC isoform X2

      UniProtKB/Swiss-Prot
      Q8K3C3
      Conserved Domains (2) summary
      pfam06384
      Location:113188
      ICAT; Beta-catenin-interacting protein ICAT
      pfam04111
      Location:887
      APG6; Autophagy protein Apg6
    2. XM_017320382.1XP_017175871.1  protein LZIC isoform X2

      UniProtKB/Swiss-Prot
      Q8K3C3
      Conserved Domains (2) summary
      pfam06384
      Location:113188
      ICAT; Beta-catenin-interacting protein ICAT
      pfam04111
      Location:887
      APG6; Autophagy protein Apg6
    3. XM_006539152.3XP_006539215.2  protein LZIC isoform X1

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_166299.2 Reference GRCm38.p4 NOD/MrkTac

      Range
      2899609..2911150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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