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    Tmem97 transmembrane protein 97 [ Mus musculus (house mouse) ]

    Gene ID: 69071, updated on 9-Sep-2018

    Summary

    Official Symbol
    Tmem97provided by MGI
    Official Full Name
    transmembrane protein 97provided by MGI
    Primary source
    MGI:MGI:1916321
    See related
    Ensembl:ENSMUSG00000037278 Vega:OTTMUSG00000000140
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI115531; AL022956; D11Bhm182e; 1810014L12Rik
    Expression
    Broad expression in testis adult (RPKM 206.9), liver E18 (RPKM 37.6) and 15 other tissues See more
    Orthologs

    Genomic context

    See Tmem97 in Genome Data Viewer
    Location:
    11 B5; 11 46.74 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (78541817..78550735, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (78355319..78364237, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor, alpha-induced protein 1 (endothelial) Neighboring gene intraflagellar transport 20 Neighboring gene ribosomal protein L10 pseudogene Neighboring gene annexin A2 pseudogene Neighboring gene nemo like kinase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC102369

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cholesterol homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    rough endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    sigma intracellular receptor 2
    Names
    sigma-2 receptor
    sigma2 receptor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133706.2NP_598467.1  sigma intracellular receptor 2

      See identical proteins and their annotated locations for NP_598467.1

      Status: PROVISIONAL

      Source sequence(s)
      AL591177
      Consensus CDS
      CCDS25112.1
      UniProtKB/Swiss-Prot
      Q8VD00
      Related
      ENSMUSP00000099532.4, OTTMUSP00000000196, ENSMUST00000103242.4, OTTMUST00000000455
      Conserved Domains (1) summary
      pfam10914
      Location:11150
      DUF2781; Protein of unknown function (DUF2781)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      78541817..78550735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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