Format

Send to:

Choose Destination
    • Showing Current items.

    Eif1b eukaryotic translation initiation factor 1B [ Mus musculus (house mouse) ]

    Gene ID: 68969, updated on 9-Sep-2018

    Summary

    Official Symbol
    Eif1bprovided by MGI
    Official Full Name
    eukaryotic translation initiation factor 1Bprovided by MGI
    Primary source
    MGI:MGI:1916219
    See related
    Ensembl:ENSMUSG00000006941 Vega:OTTMUSG00000062583
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gc20; 1500010M16Rik; 3110001N14Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 70.4), CNS E14 (RPKM 53.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Eif1b in Genome Data Viewer
    Location:
    9; 9 F4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (120492606..120495327)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (120401724..120404445)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene myosin VIIA and Rab interacting protein Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene RIKEN cDNA D830035M03 gene Neighboring gene predicted gene 7229 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    • RNA transport, organism-specific biosystem (from KEGG)
      RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • RNA transport, conserved biosystem (from KEGG)
      RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosomal small subunit binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    translational initiation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    eukaryotic 43S preinitiation complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    eukaryotic translation initiation factor 1b
    Names
    translation factor sui1 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026892.3NP_081168.1  eukaryotic translation initiation factor 1b

      See identical proteins and their annotated locations for NP_081168.1

      Status: VALIDATED

      Source sequence(s)
      AI154212, AK005192, AK013965
      Consensus CDS
      CCDS23628.1
      UniProtKB/Swiss-Prot
      Q9CXU9
      Related
      ENSMUSP00000007139.4, OTTMUSP00000079019, ENSMUST00000007139.5, OTTMUST00000152442
      Conserved Domains (1) summary
      cl00229
      Location:4113
      eIF1_SUI1_like; Eukaryotic initiation factor 1 and related proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      120492606..120495327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center