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    Aspscr1 alveolar soft part sarcoma chromosome region, candidate 1 (human) [ Mus musculus (house mouse) ]

    Gene ID: 68938, updated on 23-Jun-2021

    Summary

    Official Symbol
    Aspscr1provided by MGI
    Official Full Name
    alveolar soft part sarcoma chromosome region, candidate 1 (human)provided by MGI
    Primary source
    MGI:MGI:1916188
    See related
    Ensembl:ENSMUSG00000025142
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A; AS; TUG; ASPC; ASPL; ASPS; RCC1; RCC17; ASPCR1; 1190006K01Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 52.7), duodenum adult (RPKM 26.9) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Aspscr1 in Genome Data Viewer
    Location:
    11; 11 E2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (120563799..120600273)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (120672973..120709447)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (120534287..120570761)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene myeloid-associated differentiation marker-like 2 Neighboring gene notum palmitoleoyl-protein carboxylesterase Neighboring gene centromere protein X Neighboring gene leucine rich repeat containing 45

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasmic vesicle membrane TAS
    Traceable Author Statement
    more info
     
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extrinsic component of membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    tether containing UBX domain for GLUT4
    Names
    alveolar soft part sarcoma chromosomal region candidate gene 1 protein homolog
    tether, containing a UBX domain, for GLUT4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164224.1NP_001157696.1  tether containing UBX domain for GLUT4 isoform 3

      See identical proteins and their annotated locations for NP_001157696.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents use of an alternate promoter and 5' UTR, uses a downstream start codon, and lacks an alternate in-frame exon in the central coding region, compared to variant 1. The resulting isoform (3) has a shorter N-terminus and lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      AK146061, AY349132
      Consensus CDS
      CCDS49008.1
      UniProtKB/Swiss-Prot
      Q8VBT9
      Related
      ENSMUSP00000101766.3, ENSMUST00000106160.9
      Conserved Domains (2) summary
      cd16118
      Location:310361
      UBX2_UBXN9; Ubiquitin regulatory domain X (UBX) 2 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
      cd17075
      Location:1394
      UBX1_UBXN9; Ubiquitin regulatory domain X (UBX) 1 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
    2. NM_001363055.1NP_001349984.1  tether containing UBX domain for GLUT4 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL663030, AY349133
      Conserved Domains (1) summary
      pfam11470
      Location:1578
      TUG-UBL1; TUG ubiquitin-like domain
    3. NM_001363056.1NP_001349985.1  tether containing UBX domain for GLUT4 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL663030, AY349133
      Conserved Domains (2) summary
      pfam11470
      Location:463
      TUG-UBL1; TUG ubiquitin-like domain
      cl00155
      Location:370441
      UBQ; Ubiquitin-like proteins
    4. NM_026877.2NP_081153.1  tether containing UBX domain for GLUT4 isoform 1

      See identical proteins and their annotated locations for NP_081153.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1), also known as the long isoform.
      Source sequence(s)
      AY349133, CJ088693
      Consensus CDS
      CCDS25751.1
      UniProtKB/Swiss-Prot
      Q8VBT9
      Related
      ENSMUSP00000026135.9, ENSMUST00000026135.15
      Conserved Domains (2) summary
      pfam11470
      Location:1578
      TUG-UBL1; TUG ubiquitin-like domain
      cl00155
      Location:385456
      UBQ; Ubiquitin-like proteins
    5. NM_198223.2NP_937866.1  tether containing UBX domain for GLUT4 isoform 2

      See identical proteins and their annotated locations for NP_937866.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents use of an alternate promoter and 5' UTR and uses a downstream start codon, compared to variant 1. The resulting isoform (2), also known as the short isoform, has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AK146061, AY349132
      Consensus CDS
      CCDS25752.1
      UniProtKB/Swiss-Prot
      Q8VBT9
      Related
      ENSMUSP00000101765.4, ENSMUST00000106159.10
      Conserved Domains (2) summary
      cd16118
      Location:310382
      UBX2_UBXN9; Ubiquitin regulatory domain X (UBX) 2 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
      cd17075
      Location:1394
      UBX1_UBXN9; Ubiquitin regulatory domain X (UBX) 1 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      120563799..120600273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534086.4XP_006534149.1  tether containing UBX domain for GLUT4 isoform X2

      See identical proteins and their annotated locations for XP_006534149.1

      UniProtKB/Swiss-Prot
      Q8VBT9
      Conserved Domains (2) summary
      cd16118
      Location:310382
      UBX2_UBXN9; Ubiquitin regulatory domain X (UBX) 2 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
      cd17075
      Location:1394
      UBX1_UBXN9; Ubiquitin regulatory domain X (UBX) 1 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
    2. XM_030246265.1XP_030102125.1  tether containing UBX domain for GLUT4 isoform X1

      Conserved Domains (3) summary
      cd16105
      Location:1865
      Ubl_ASPSCR1_like; Ubiquitin-like (Ubl) domain found at the N-terminus of mammalian ASPSCR1 (alveolar soft part sarcoma chromosomal region candidate gene 1 protein), Saccharomyces cerevisie Ubx4p, and similar proteins
      cd16118
      Location:372423
      UBX2_UBXN9; Ubiquitin regulatory domain X (UBX) 2 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
      cd17075
      Location:75156
      UBX1_UBXN9; Ubiquitin regulatory domain X (UBX) 1 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
    3. XM_030246266.2XP_030102126.1  tether containing UBX domain for GLUT4 isoform X3

      Conserved Domains (2) summary
      cd16118
      Location:310361
      UBX2_UBXN9; Ubiquitin regulatory domain X (UBX) 2 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
      cd17075
      Location:1394
      UBX1_UBXN9; Ubiquitin regulatory domain X (UBX) 1 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
    4. XM_036156943.1XP_036012836.1  tether containing UBX domain for GLUT4 isoform X2

      Conserved Domains (2) summary
      cd16118
      Location:310382
      UBX2_UBXN9; Ubiquitin regulatory domain X (UBX) 2 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
      cd17075
      Location:1394
      UBX1_UBXN9; Ubiquitin regulatory domain X (UBX) 1 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
    5. XM_006534087.4XP_006534150.1  tether containing UBX domain for GLUT4 isoform X2

      See identical proteins and their annotated locations for XP_006534150.1

      UniProtKB/Swiss-Prot
      Q8VBT9
      Conserved Domains (2) summary
      cd16118
      Location:310382
      UBX2_UBXN9; Ubiquitin regulatory domain X (UBX) 2 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
      cd17075
      Location:1394
      UBX1_UBXN9; Ubiquitin regulatory domain X (UBX) 1 found in UBX domain protein 9 (UBXN9, UBXD9, or ASPSCR1) and similar proteins
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