Format

Send to:

Choose Destination
    • Showing Current items.

    Smim11 small integral membrane protein 11 [ Mus musculus (house mouse) ]

    Gene ID: 68936, updated on 20-Mar-2018

    Summary

    Official Symbol
    Smim11provided by MGI
    Official Full Name
    small integral membrane protein 11provided by MGI
    Primary source
    MGI:MGI:1916186
    See related
    Ensembl:ENSMUSG00000051989 Vega:OTTMUSG00000028548
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam165b; Smim11a; C21orf51; 1190017O12Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 21.5), CNS E11.5 (RPKM 20.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Smim11 in Genome Data Viewer
    Location:
    16; 16 C4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (92301303..92313041)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (92301548..92313286)

    Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41497 Neighboring gene potassium voltage-gated channel, Isk-related subfamily, gene 2 Neighboring gene RIKEN cDNA 1700048M11 gene Neighboring gene family with sequence similarity 243 Neighboring gene small integral membrane protein 34

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 11A
    Names
    family with sequence similarity 165, member B
    protein FAM165B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138743.2NP_620082.1  small integral membrane protein 11A

      See identical proteins and their annotated locations for NP_620082.1

      Status: VALIDATED

      Source sequence(s)
      AK004538, BM932344
      Consensus CDS
      CCDS37404.1
      UniProtKB/Swiss-Prot
      Q99J19
      Related
      ENSMUSP00000070724.4, OTTMUSP00000036101, ENSMUST00000063641.10, OTTMUST00000070751
      Conserved Domains (1) summary
      pfam14981
      Location:450
      FAM165; FAM165 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

      Range
      92301303..92313041
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center