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    Smim11 small integral membrane protein 11 [ Mus musculus (house mouse) ]

    Gene ID: 68936, updated on 17-Aug-2024

    Summary

    Official Symbol
    Smim11provided by MGI
    Official Full Name
    small integral membrane protein 11provided by MGI
    Primary source
    MGI:MGI:1916186
    See related
    Ensembl:ENSMUSG00000051989 AllianceGenome:MGI:1916186
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam165b; Smim11a; C21orf51; 1190017O12Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alimentary system; cardiovascular system; genitourinary system; nervous system; and sensory organ. Orthologous to human SMIM11 (small integral membrane protein 11). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 21.5), CNS E11.5 (RPKM 20.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Smim11 in Genome Data Viewer
    Location:
    16 C4; 16 53.55 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (92098131..92109929)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (92301241..92313041)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41497 Neighboring gene STARR-seq mESC enhancer starr_41508 Neighboring gene potassium voltage-gated channel, Isk-related subfamily, gene 2 Neighboring gene STARR-positive B cell enhancer ABC_E3175 Neighboring gene RIKEN cDNA 1700048M11 gene Neighboring gene family with sequence similarity 243 Neighboring gene small integral membrane protein 34

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 11
    Names
    family with sequence similarity 165, member B
    protein FAM165B
    small integral membrane protein 11A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138743.2NP_620082.1  small integral membrane protein 11

      Status: VALIDATED

      Source sequence(s)
      AK004538, BM932344
      Consensus CDS
      CCDS37404.1
      UniProtKB/Swiss-Prot
      Q99J19
      Related
      ENSMUSP00000070724.5, ENSMUST00000063641.11
      Conserved Domains (1) summary
      pfam14981
      Location:450
      FAM165; FAM165 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      92098131..92109929
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030249260.2XP_030105120.1  small integral membrane protein 11 isoform X1

      UniProtKB/Swiss-Prot
      Q99J19
      Conserved Domains (1) summary
      pfam14981
      Location:450
      FAM165; FAM165 family