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    Abhd13 abhydrolase domain containing 13 [ Mus musculus (house mouse) ]

    Gene ID: 68904, updated on 23-Jun-2021

    Summary

    Official Symbol
    Abhd13provided by MGI
    Official Full Name
    abhydrolase domain containing 13provided by MGI
    Primary source
    MGI:MGI:1916154
    See related
    Ensembl:ENSMUSG00000040396
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI463703; AI788994; 1110065L07Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 4.9), placenta adult (RPKM 4.4) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Abhd13 in Genome Data Viewer
    Location:
    8; 8 A1.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (10027717..10042155)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (9977717..9992155)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (9977717..9992155)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene NALCN channel auxiliary factor 1 Neighboring gene tumor necrosis factor (ligand) superfamily, member 13b Neighboring gene ligase IV, DNA, ATP-dependent Neighboring gene predicted gene 44788

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables palmitoyl-(protein) hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables palmitoyl-(protein) hydrolase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in protein depalmitoylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in dendrite cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    protein ABHD13
    Names
    abhydrolase domain-containing protein 13
    alpha/beta hydrolase domain-containing protein 13

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081119.1NP_001074588.1  protein ABHD13

      See identical proteins and their annotated locations for NP_001074588.1

      Status: VALIDATED

      Description
      Transcript Variant: : This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AI553397, AK032495, AK044407, BY742957
      Consensus CDS
      CCDS40217.1
      UniProtKB/Swiss-Prot
      Q80UX8
      Related
      ENSMUSP00000036730.6, ENSMUST00000048216.6
      Conserved Domains (2) summary
      pfam00561
      Location:115300
      Abhydrolase_1; alpha/beta hydrolase fold
      pfam12695
      Location:116299
      Abhydrolase_5; Alpha/beta hydrolase family
    2. NM_026868.1NP_081144.1  protein ABHD13

      See identical proteins and their annotated locations for NP_081144.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AI553397, AK032495, AK044407, BY742957, DV655120
      Consensus CDS
      CCDS40217.1
      UniProtKB/Swiss-Prot
      Q80UX8
      Related
      ENSMUSP00000116130.2, ENSMUST00000139793.8
      Conserved Domains (2) summary
      pfam00561
      Location:115300
      Abhydrolase_1; alpha/beta hydrolase fold
      pfam12695
      Location:116299
      Abhydrolase_5; Alpha/beta hydrolase family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      10027717..10042155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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