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    Ankrd46 ankyrin repeat domain 46 [ Mus musculus (house mouse) ]

    Gene ID: 68839, updated on 26-Sep-2022

    Summary

    Official Symbol
    Ankrd46provided by MGI
    Official Full Name
    ankyrin repeat domain 46provided by MGI
    Primary source
    MGI:MGI:1916089
    See related
    Ensembl:ENSMUSG00000048307 AllianceGenome:MGI:1916089
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110054N06Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Orthologous to human ANKRD46 (ankyrin repeat domain 46). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 35.6), bladder adult (RPKM 34.3) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ankrd46 in Genome Data Viewer
    Location:
    15; 15 B3.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (36477814..36496937, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (36477668..36496791, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34150 Neighboring gene predicted gene, 34316 Neighboring gene sorting nexin 31 Neighboring gene poly(A) binding protein, cytoplasmic 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 46
    Names
    ANK-S
    ankyrin repeat small protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358006.1NP_001344935.1  ankyrin repeat domain-containing protein 46

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC137871, AC158986
      Consensus CDS
      CCDS27429.1
      UniProtKB/Swiss-Prot
      Q8BV97
      UniProtKB/TrEMBL
      A0A6P5R3E8
      Conserved Domains (2) summary
      COG0666
      Location:15148
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:1542
      ANK; ANK repeat [structural motif]
    2. NM_001358007.1NP_001344936.1  ankyrin repeat domain-containing protein 46

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC137871, AC158986
      Consensus CDS
      CCDS27429.1
      UniProtKB/Swiss-Prot
      Q8BV97
      UniProtKB/TrEMBL
      A0A6P5R3E8
      Conserved Domains (2) summary
      COG0666
      Location:15148
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:1542
      ANK; ANK repeat [structural motif]
    3. NM_175134.4NP_780343.1  ankyrin repeat domain-containing protein 46

      See identical proteins and their annotated locations for NP_780343.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      BC035553, BQ715954
      Consensus CDS
      CCDS27429.1
      UniProtKB/Swiss-Prot
      Q8BTZ5, Q8BV97
      UniProtKB/TrEMBL
      A0A6P5R3E8
      Related
      ENSMUSP00000052521.8, ENSMUST00000057486.9
      Conserved Domains (2) summary
      COG0666
      Location:15148
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:1542
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      36477814..36496937 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)