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    Ddi2 DNA-damage inducible protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 68817, updated on 8-Sep-2018

    Summary

    Official Symbol
    Ddi2provided by MGI
    Official Full Name
    DNA-damage inducible protein 2provided by MGI
    Primary source
    MGI:MGI:1917244
    See related
    Ensembl:ENSMUSG00000078515 Vega:OTTMUSG00000010364
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI604911; AU040698; 1110056G13Rik; 1700027M01Rik; 9130022E05Rik
    Expression
    Ubiquitous expression in liver adult (RPKM 38.6), bladder adult (RPKM 18.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ddi2 in Genome Data Viewer
    Location:
    4; 4 E1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (141683563..141723419, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (141239478..141279334, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 34 Neighboring gene pleckstrin homology domain containing, family M (with RUN domain) member 2 Neighboring gene regulatory solute carrier protein, family 1, member 1 Neighboring gene predicted gene, 34863 Neighboring gene agmatine ureohydrolase (agmatinase)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    aspartic-type endopeptidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    ubiquitin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    protein processing ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein DDI1 homolog 2
    NP_001017966.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017966.2NP_001017966.1  protein DDI1 homolog 2

      See identical proteins and their annotated locations for NP_001017966.1

      Status: VALIDATED

      Source sequence(s)
      AL671733, BF468816, BY731719, CD550969
      Consensus CDS
      CCDS18880.1
      UniProtKB/Swiss-Prot
      A2ADY9
      Related
      ENSMUSP00000099542.4, OTTMUSP00000011108, ENSMUST00000102484.4, OTTMUST00000024153
      Conserved Domains (2) summary
      cd05479
      Location:221343
      RP_DDI; RP_DDI; retropepsin-like domain of DNA damage inducible protein
      cd01796
      Location:376
      DDI1_N; DNA damage inducible protein 1 ubiquitin-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      141683563..141723419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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