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    Phtf2 putative homeodomain transcription factor 2 [ Mus musculus (house mouse) ]

    Gene ID: 68770, updated on 2-Oct-2018

    Summary

    Official Symbol
    Phtf2provided by MGI
    Official Full Name
    putative homeodomain transcription factor 2provided by MGI
    Primary source
    MGI:MGI:1916020
    See related
    Ensembl:ENSMUSG00000039987 Vega:OTTMUSG00000029591
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C77923; AI447096; 1110054G21Rik; 9530062N20Rik
    Expression
    Broad expression in heart adult (RPKM 6.9), CNS E18 (RPKM 5.0) and 22 other tissues See more
    Orthologs

    Genomic context

    See Phtf2 in Genome Data Viewer
    Location:
    5; 5 A3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (20758664..20882124, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (20264482..20387942, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 2 Neighboring gene lamin B2 pseudogene Neighboring gene mitochondrial ribosomal protein S36 pseudogene Neighboring gene ribosomal protein L31, pseudogene 5 Neighboring gene RIKEN cDNA A630072M18 gene Neighboring gene predicted gene, 42219 Neighboring gene transmembrane protein 60 Neighboring gene round spermatid basic protein 1-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    putative homeodomain transcription factor 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172992.3NP_766580.3  putative homeodomain transcription factor 2

      See identical proteins and their annotated locations for NP_766580.3

      Status: VALIDATED

      Source sequence(s)
      AK004246, AK037021, AK042382, AK151762, CB245749
      Consensus CDS
      CCDS51426.1
      UniProtKB/Swiss-Prot
      Q8CB19
      UniProtKB/TrEMBL
      A0A0R4J1Q1, Q8C9D2
      Related
      ENSMUSP00000114087.1, OTTMUSP00000037976, ENSMUST00000118174.7, OTTMUST00000073396
      Conserved Domains (1) summary
      pfam12129
      Location:5152
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      20758664..20882124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535801.1XP_006535864.1  putative homeodomain transcription factor 2 isoform X1

      Conserved Domains (1) summary
      pfam12129
      Location:5152
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor
    2. XM_006535803.1XP_006535866.1  putative homeodomain transcription factor 2 isoform X2

    3. XM_006535804.3XP_006535867.1  putative homeodomain transcription factor 2 isoform X3

      Conserved Domains (1) summary
      pfam12129
      Location:5152
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor
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