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    Gtf2f2 general transcription factor IIF, polypeptide 2 [ Mus musculus (house mouse) ]

    Gene ID: 68705, updated on 31-Jan-2019

    Summary

    Official Symbol
    Gtf2f2provided by MGI
    Official Full Name
    general transcription factor IIF, polypeptide 2provided by MGI
    Primary source
    MGI:MGI:1915955
    See related
    Ensembl:ENSMUSG00000067995
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI326315; 1110031C13Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 11.1), placenta adult (RPKM 10.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Gtf2f2 in Genome Data Viewer
    Location:
    14; 14 D3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (75896937..76010865, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (76296744..76410672, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene predicted gene 4285 Neighboring gene small nucleolar RNA, H/ACA box 31 Neighboring gene tumor protein, translationally-controlled 1 Neighboring gene armadillo repeat containing 10 pseudogene Neighboring gene potassium channel tetramerisation domain containing 4 Neighboring gene predicted gene, 41213 Neighboring gene predicted gene, 36429 Neighboring gene predicted gene, 36477

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    microtubule cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor TFIIF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor TFIIH holo complex ISO
    Inferred from Sequence Orthology
    more info
     
    transcriptional preinitiation complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    general transcription factor IIF subunit 2
    Names
    ATP-dependent helicase GTF2F2
    TFIIF-beta
    transcription initiation factor IIF subunit beta
    NP_081092.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026816.3NP_081092.1  general transcription factor IIF subunit 2

      See identical proteins and their annotated locations for NP_081092.1

      Status: PROVISIONAL

      Source sequence(s)
      AK144858
      Consensus CDS
      CCDS36981.1
      UniProtKB/Swiss-Prot
      Q8R0A0
      UniProtKB/TrEMBL
      Q3UMJ4
      Related
      ENSMUSP00000086312.4, ENSMUST00000088922.4
      Conserved Domains (1) summary
      pfam02270
      Location:13236
      TFIIF_beta; Transcription initiation factor IIF, beta subunit

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      75896937..76010865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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