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    Tm2d3 TM2 domain containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 68634, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tm2d3provided by MGI
    Official Full Name
    TM2 domain containing 3provided by MGI
    Primary source
    MGI:MGI:1915884
    See related
    Ensembl:ENSMUSG00000078681
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Blp2; 1110025I09Rik; 5930422O05Rik
    Expression
    Ubiquitous expression in kidney adult (RPKM 55.3), ovary adult (RPKM 37.2) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Tm2d3 in Genome Data Viewer
    Location:
    7; 7 C
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (65343128..65351661)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (65693417..65701913)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (72838303..72846799)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene threonyl-tRNA synthetase-like 2 Neighboring gene predicted gene, 51484 Neighboring gene predicted gene, 33234 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene predicted gene, 51485

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in lateral inhibition ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    TM2 domain-containing protein 3
    Names
    BBP-like protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026795.3NP_081071.1  TM2 domain-containing protein 3 isoform 1

      See identical proteins and their annotated locations for NP_081071.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) lacks an exon within the coding region, but maintains the same reading frame, as compared to variant 2. Thus isoform 1 lacks an internal fragment of 31 aa compared to isoform 2.
      Source sequence(s)
      AK003917, AK077858, BB434079
      Consensus CDS
      CCDS21340.1
      UniProtKB/Swiss-Prot
      Q8BJ83
      Related
      ENSMUSP00000032726.8, ENSMUST00000032726.14
      Conserved Domains (1) summary
      pfam05154
      Location:165214
      TM2; TM2 domain
    2. NM_178056.3NP_835157.1  TM2 domain-containing protein 3 isoform 2 precursor

      See identical proteins and their annotated locations for NP_835157.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the longer transcript and encodes the longer isoform (2).
      Source sequence(s)
      AK077858, BB434079
      Consensus CDS
      CCDS21341.1
      UniProtKB/Swiss-Prot
      Q8BJ83
      Related
      ENSMUSP00000103119.4, ENSMUST00000107495.5
      Conserved Domains (1) summary
      pfam05154
      Location:196245
      TM2; TM2 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      65343128..65351661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153399.1XP_036009292.1  TM2 domain-containing protein 3 isoform X2

      Conserved Domains (1) summary
      pfam05154
      Location:156205
      TM2; TM2 domain
    2. XM_036153398.1XP_036009291.1  TM2 domain-containing protein 3 isoform X1

      Related
      ENSMUSP00000145534.2, ENSMUST00000206517.2
      Conserved Domains (1) summary
      pfam05154
      Location:187236
      TM2; TM2 domain
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