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    Cryl1 crystallin, lambda 1 [ Mus musculus (house mouse) ]

    Gene ID: 68631, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cryl1provided by MGI
    Official Full Name
    crystallin, lambda 1provided by MGI
    Primary source
    MGI:MGI:1915881
    See related
    Ensembl:ENSMUSG00000021947
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C85932; gul3dh; 1110025H08Rik; A230106J09Rik
    Expression
    Biased expression in kidney adult (RPKM 161.7), duodenum adult (RPKM 56.6) and 11 other tissues See more
    Orthologs

    Genomic context

    See Cryl1 in Genome Data Viewer
    Location:
    14 C3; 14 30.1 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (57275034..57398483, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (57893871..58017320, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene gap junction protein, beta 6 Neighboring gene 40S ribosomal protein S17 pseudogene Neighboring gene predicted gene 8971 Neighboring gene predicted gene, 41161 Neighboring gene predicted gene, 29717 Neighboring gene intraflagellar transport 88 Neighboring gene interleukin 17D

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    3-hydroxyacyl-CoA dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
     
    L-gulonate 3-dehydrogenase activity ISO
    Inferred from Sequence Orthology
    more info
     
    NAD+ binding ISO
    Inferred from Sequence Orthology
    more info
     
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    lambda-crystallin homolog
    Names
    L-gulonate 3-dehydrogenase
    crystallin, lamda 1
    NP_084280.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030004.3NP_084280.2  lambda-crystallin homolog

      See identical proteins and their annotated locations for NP_084280.2

      Status: PROVISIONAL

      Source sequence(s)
      CT010506
      Consensus CDS
      CCDS27155.1
      UniProtKB/Swiss-Prot
      Q99KP3
      UniProtKB/TrEMBL
      A7VMV2
      Related
      ENSMUSP00000022517.7, ENSMUST00000022517.8
      Conserved Domains (3) summary
      PRK06129
      Location:9313
      PRK06129; 3-hydroxyacyl-CoA dehydrogenase; Validated
      pfam00725
      Location:192259
      3HCDH; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
      pfam02737
      Location:9186
      3HCDH_N; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      57275034..57398483 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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