Format

Send to:

Choose Destination
    • Showing Current items.

    Rpl34 ribosomal protein L34 [ Mus musculus (house mouse) ]

    Gene ID: 68436, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rpl34provided by MGI
    Official Full Name
    ribosomal protein L34provided by MGI
    Primary source
    MGI:MGI:1915686
    See related
    Ensembl:ENSMUSG00000062006
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1100001I22Rik
    Expression
    Ubiquitous expression in large intestine adult (RPKM 318.4), placenta adult (RPKM 290.7) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rpl34 in Genome Data Viewer
    Location:
    3; 3 G3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (130520476..130524047, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (130726827..130730398, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (130429749..130433226, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36373 Neighboring gene oligosaccharyltransferase complex subunit (non-catalytic) Neighboring gene predicted gene 43522 Neighboring gene predicted gene, 36443

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103270

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005859.3NP_001005859.1  60S ribosomal protein L34

      See identical proteins and their annotated locations for NP_001005859.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC154993, AK003177, CJ041925
      Consensus CDS
      CCDS17841.1
      UniProtKB/Swiss-Prot
      Q9D1R9
      Related
      ENSMUSP00000078092.7, ENSMUST00000079085.11
      Conserved Domains (1) summary
      pfam01199
      Location:196
      Ribosomal_L34e; Ribosomal protein L34e
    2. NM_001287581.1NP_001274510.1  60S ribosomal protein L34

      See identical proteins and their annotated locations for NP_001274510.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      BC058118, CJ041925, CJ043938, CJ044447
      Consensus CDS
      CCDS17841.1
      UniProtKB/Swiss-Prot
      Q9D1R9
      Related
      ENSMUSP00000142486.2, ENSMUST00000196202.5
      Conserved Domains (1) summary
      pfam01199
      Location:196
      Ribosomal_L34e; Ribosomal protein L34e
    3. NM_026724.2NP_081000.1  60S ribosomal protein L34

      See identical proteins and their annotated locations for NP_081000.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      BC058118, CJ041925, CJ043938
      Consensus CDS
      CCDS17841.1
      UniProtKB/Swiss-Prot
      Q9D1R9
      Related
      ENSMUSP00000086614.5, ENSMUST00000062601.14
      Conserved Domains (1) summary
      pfam01199
      Location:196
      Ribosomal_L34e; Ribosomal protein L34e

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      130520476..130524047 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163263.1XP_036019156.1  60S ribosomal protein L34 isoform X1

      Conserved Domains (1) summary
      pfam01199
      Location:196
      Ribosomal_L34e; Ribosomal protein L34e
    Support Center