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    Ankrd13a ankyrin repeat domain 13a [ Mus musculus (house mouse) ]

    Gene ID: 68420, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ankrd13aprovided by MGI
    Official Full Name
    ankyrin repeat domain 13aprovided by MGI
    Primary source
    MGI:MGI:1915670
    See related
    Ensembl:ENSMUSG00000041870
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ANKRD13; AU046136; 1100001D10Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 63.8), colon adult (RPKM 53.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ankrd13a in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (114774923..114805821)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (115225149..115255830)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene trichoplein, keratin filament binding Neighboring gene microRNA 7028 Neighboring gene GIT ArfGAP 2 Neighboring gene RIKEN cDNA 4930515G01 gene Neighboring gene RIKEN cDNA 1500011B03 gene Neighboring gene RIKEN cDNA 2610524H06 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC118502

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ubiquitin-dependent protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    negative regulation of protein localization to endosome ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of receptor internalization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    late endosome ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 13A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026718.2NP_080994.2  ankyrin repeat domain-containing protein 13A

      See identical proteins and their annotated locations for NP_080994.2

      Status: PROVISIONAL

      Source sequence(s)
      BC061692
      Consensus CDS
      CCDS19572.1
      UniProtKB/Swiss-Prot
      Q80UP5
      Related
      ENSMUSP00000099638.4, ENSMUST00000102578.10
      Conserved Domains (4) summary
      cd00204
      Location:4101
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam11904
      Location:156468
      GPCR_chapero_1; GPCR-chaperone
      pfam13637
      Location:4190
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:1238
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      114774923..114805821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530454.3XP_006530517.2  ankyrin repeat domain-containing protein 13A isoform X1

      Conserved Domains (4) summary
      cd00204
      Location:4101
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam11904
      Location:156469
      GPCR_chapero_1; GPCR-chaperone
      pfam13637
      Location:4190
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:1238
      ANK; ANK repeat [structural motif]
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