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    Ncapd2 non-SMC condensin I complex, subunit D2 [ Mus musculus (house mouse) ]

    Gene ID: 68298, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ncapd2provided by MGI
    Official Full Name
    non-SMC condensin I complex, subunit D2provided by MGI
    Primary source
    MGI:MGI:1915548
    See related
    Ensembl:ENSMUSG00000038252
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CNAP1; CAP-D2; mKIAA0159; 2810406C15Rik; 2810465G24Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 53.3), thymus adult (RPKM 40.7) and 24 other tissues See more
    Orthologs

    Genomic context

    See Ncapd2 in Genome Data Viewer
    Location:
    6; 6 F2
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (125168007..125191748, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (125118025..125141604, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene NOP2 nucleolar protein Neighboring gene intermediate filament family orphan 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase Neighboring gene small Cajal body-specific RNA 10 Neighboring gene mitochondrial ribosomal protein L51 Neighboring gene microRNA 3098

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0159, MGC39046

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    histone binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome separation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    meiotic chromosome condensation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    mitotic chromosome condensation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitotic chromosome condensation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    condensed chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    condensed chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    condensed chromosome, centromeric region IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    condensin complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    condensin complex ISO
    Inferred from Sequence Orthology
    more info
     
    condensin complex TAS
    Traceable Author Statement
    more info
    PubMed 
    colocalizes_with cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with nuclear chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear condensin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    condensin complex subunit 1
    Names
    XCAP-D2 homolog
    chromosome condensation-related SMC-associated protein 1
    chromosome-associated protein D2
    mCAP-D2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146171.1NP_666283.1  condensin complex subunit 1

      See identical proteins and their annotated locations for NP_666283.1

      Status: PROVISIONAL

      Source sequence(s)
      BC026982
      Consensus CDS
      CCDS39636.1
      UniProtKB/Swiss-Prot
      Q8K2Z4
      UniProtKB/TrEMBL
      A0A0R4J0H7
      Related
      ENSMUSP00000042260.4, ENSMUST00000043848.10
      Conserved Domains (4) summary
      COG5098
      Location:1851235
      COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
      pfam12717
      Location:10591224
      Cnd1; non-SMC mitotic condensation complex subunit 1
      pfam12922
      Location:75240
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
      cl15851
      Location:385488
      BcsB; Bacterial cellulose synthase subunit

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      125168007..125191748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506532.3XP_006506595.1  condensin complex subunit 1 isoform X2

      Conserved Domains (4) summary
      COG5098
      Location:671117
      COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
      pfam12717
      Location:9411106
      Cnd1; non-SMC mitotic condensation complex subunit 1
      pfam12922
      Location:1122
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
      cl15851
      Location:267370
      BcsB; Bacterial cellulose synthase subunit
    2. XM_006506531.3XP_006506594.1  condensin complex subunit 1 isoform X1

      See identical proteins and their annotated locations for XP_006506594.1

      UniProtKB/Swiss-Prot
      Q8K2Z4
      UniProtKB/TrEMBL
      A0A0R4J0H7
      Conserved Domains (4) summary
      COG5098
      Location:1851235
      COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
      pfam12717
      Location:10591224
      Cnd1; non-SMC mitotic condensation complex subunit 1
      pfam12922
      Location:75240
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
      cl15851
      Location:385488
      BcsB; Bacterial cellulose synthase subunit
    3. XM_006506533.2XP_006506596.1  condensin complex subunit 1 isoform X3

      Conserved Domains (2) summary
      pfam12922
      Location:75240
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
      cl15851
      Location:385488
      BcsB; Bacterial cellulose synthase subunit
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