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    Stt3b STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 68292, updated on 9-Sep-2018

    Summary

    Official Symbol
    Stt3bprovided by MGI
    Official Full Name
    STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1915542
    See related
    Ensembl:ENSMUSG00000032437 Vega:OTTMUSG00000062861
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Simp; 1300006C19Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 118.7), genital fat pad adult (RPKM 49.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Stt3b in Genome Data Viewer
    Location:
    9; 9 F3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (115242581..115310421, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (115151699..115219539, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene oxysterol binding protein-like 10 Neighboring gene predicted gene 4665 Neighboring gene predicted gene, 26962 Neighboring gene stathmin 1, related sequence 1 Neighboring gene RIKEN cDNA 4930428G15 gene Neighboring gene predicted gene, 30762

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    dolichyl-diphosphooligosaccharide-protein glycotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    dolichyl-diphosphooligosaccharide-protein glycotransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    oligosaccharyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring glycosyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    co-translational protein modification ISO
    Inferred from Sequence Orthology
    more info
     
    glycoprotein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    post-translational protein modification IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    post-translational protein modification ISO
    Inferred from Sequence Orthology
    more info
     
    protein N-linked glycosylation via asparagine IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein N-linked glycosylation via asparagine ISO
    Inferred from Sequence Orthology
    more info
     
    protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
     
    response to unfolded protein ISO
    Inferred from Sequence Orthology
    more info
     
    ubiquitin-dependent ERAD pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    oligosaccharyltransferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
    Names
    B6dom1 antigen
    oligosaccharyl transferase subunit STT3B
    source of immunodominant MHC-associated peptides
    NP_077184.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024222.3NP_077184.2  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B

      See identical proteins and their annotated locations for NP_077184.2

      Status: VALIDATED

      Source sequence(s)
      AI852345, AK152899, BC052433
      Consensus CDS
      CCDS23599.1
      UniProtKB/Swiss-Prot
      Q3TDQ1
      UniProtKB/TrEMBL
      A0A0R4J0D3
      Related
      ENSMUSP00000035010.8, OTTMUSP00000079289, ENSMUST00000035010.9
      Conserved Domains (1) summary
      pfam02516
      Location:68560
      STT3; Oligosaccharyl transferase STT3 subunit

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      115242581..115310421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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