Format

Send to:

Choose Destination
    • Showing Current items.

    Rpl39l ribosomal protein L39-like [ Mus musculus (house mouse) ]

    Gene ID: 68172, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rpl39lprovided by MGI
    Official Full Name
    ribosomal protein L39-likeprovided by MGI
    Primary source
    MGI:MGI:1915422
    See related
    Ensembl:ENSMUSG00000039209
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930517K11Rik
    Expression
    Restricted expression toward testis adult (RPKM 100.6) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rpl39l in Genome Data Viewer
    Location:
    16; 16 A1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (9988061..9992775)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (10170197..10174911)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (10170321..10175004)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene activating transcription factor 7 interacting protein 2 Neighboring gene predicted gene, 24667 Neighboring gene epithelial membrane protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ribosomal protein L39-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026594.2NP_080870.1  ribosomal protein L39-like protein

      See identical proteins and their annotated locations for NP_080870.1

      Status: VALIDATED

      Source sequence(s)
      AK019681
      Consensus CDS
      CCDS37248.1
      UniProtKB/TrEMBL
      Q9CQD0
      Related
      ENSMUSP00000041794.6, ENSMUST00000044103.6
      Conserved Domains (1) summary
      pfam00832
      Location:950
      Ribosomal_L39; Ribosomal L39 protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      9988061..9992775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522506.4XP_006522569.1  ribosomal protein L39-like protein isoform X1

      See identical proteins and their annotated locations for XP_006522569.1

      UniProtKB/TrEMBL
      Q9CQD0
      Related
      ENSMUSP00000112791.2, ENSMUST00000121292.8
      Conserved Domains (1) summary
      pfam00832
      Location:950
      Ribosomal_L39; Ribosomal L39 protein
    Support Center