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    Gar1 GAR1 ribonucleoprotein [ Mus musculus (house mouse) ]

    Gene ID: 68147, updated on 31-Jan-2019

    Summary

    Official Symbol
    Gar1provided by MGI
    Official Full Name
    GAR1 ribonucleoproteinprovided by MGI
    Primary source
    MGI:MGI:1930948
    See related
    Ensembl:ENSMUSG00000028010
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nola1; AA409823; AI326794; C430047J18Rik
    Expression
    Broad expression in liver E14 (RPKM 26.6), CNS E11.5 (RPKM 25.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Gar1 in Genome Data Viewer
    Location:
    3; 3 G3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (129824912..129831396, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (129527830..129534314, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 Neighboring gene predicted gene, 36130 Neighboring gene retinal pigment epithelium derived rhodopsin homolog Neighboring gene complement component factor i Neighboring gene predicted gene, 36180 Neighboring gene phospholipase A2, group XIIA

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    box H/ACA snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    snoRNA binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
     
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    snoRNA guided rRNA pseudouridine synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    box H/ACA snoRNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    dense fibrillar component ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    H/ACA ribonucleoprotein complex subunit 1
    Names
    GAR1 ribonucleoprotein homolog
    H/ACA small nucleolar RNPs
    nucleolar protein family A member 1
    nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)
    snoRNP protein GAR1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026578.3NP_080854.1  H/ACA ribonucleoprotein complex subunit 1

      See identical proteins and their annotated locations for NP_080854.1

      Status: VALIDATED

      Source sequence(s)
      AC111097, AK021256
      Consensus CDS
      CCDS38634.1
      UniProtKB/Swiss-Prot
      Q9CY66
      Related
      ENSMUSP00000029643.8, ENSMUST00000029643.14
      Conserved Domains (1) summary
      pfam04410
      Location:70178
      Gar1; Gar1/Naf1 RNA binding region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      129824912..129831396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011240208.2XP_011238510.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

      See identical proteins and their annotated locations for XP_011238510.1

      UniProtKB/Swiss-Prot
      Q9CY66
      Conserved Domains (1) summary
      pfam04410
      Location:70178
      Gar1; Gar1/Naf1 RNA binding region
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