Format

Send to:

Choose Destination
    • Showing Current items.

    Etaa1 Ewing tumor-associated antigen 1 [ Mus musculus (house mouse) ]

    Gene ID: 68145, updated on 31-Jan-2019

    Summary

    Official Symbol
    Etaa1provided by MGI
    Official Full Name
    Ewing tumor-associated antigen 1provided by MGI
    Primary source
    MGI:MGI:1915395
    See related
    Ensembl:ENSMUSG00000016984
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA672646; 5730466H23Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 5.4), liver E14 (RPKM 3.6) and 25 other tissues See more
    Orthologs

    Genomic context

    See Etaa1 in Genome Data Viewer
    Location:
    11; 11 A3.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (17938749..17953875, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (17838752..17853878, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 31268 Neighboring gene vacuolar protein sorting 29 pseudogene Neighboring gene Ewing tumor-associated antigen 1, opposite strand Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein serine/threonine kinase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein serine/threonine kinase activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to DNA damage stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cellular response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of protein serine/threonine kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of DNA damage checkpoint IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of DNA damage checkpoint ISO
    Inferred from Sequence Orthology
    more info
     
    replication fork processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    replication fork processing ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    nuclear replication fork IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear replication fork ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ewing's tumor-associated antigen 1 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362970.1NP_001349899.1  ewing's tumor-associated antigen 1 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK034138, AL627070
      Conserved Domains (1) summary
      pfam15350
      Location:1712
      ETAA1; Ewing's tumor-associated antigen 1 homolog
    2. NM_026576.4NP_080852.2  ewing's tumor-associated antigen 1 homolog isoform 1

      See identical proteins and their annotated locations for NP_080852.2

      Status: VALIDATED

      Source sequence(s)
      AK018594, AK019965, AL627070
      Consensus CDS
      CCDS24452.1
      UniProtKB/Swiss-Prot
      Q5SVT3
      Related
      ENSMUSP00000075957.6, ENSMUST00000076661.6
      Conserved Domains (1) summary
      pfam15350
      Location:79865
      ETAA1; Ewing's tumour-associated antigen 1 homologue

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      17938749..17953875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514800.3XP_006514863.1  ewing's tumor-associated antigen 1 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5SVT3
      Conserved Domains (1) summary
      pfam15350
      Location:1712
      ETAA1; Ewing's tumor-associated antigen 1 homolog
    Support Center