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    Kdelr1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 [ Mus musculus (house mouse) ]

    Gene ID: 68137, updated on 23-Jun-2021

    Summary

    Official Symbol
    Kdelr1provided by MGI
    Official Full Name
    KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1provided by MGI
    Primary source
    MGI:MGI:1915387
    See related
    Ensembl:ENSMUSG00000002778
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Erd2.1; AW215843; 8030486F04Rik
    Expression
    Ubiquitous expression in duodenum adult (RPKM 127.7), large intestine adult (RPKM 106.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Kdelr1 in Genome Data Viewer
    Location:
    7; 7 B3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (45522264..45533150)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (45872840..45883726)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (53128210..53139096)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene glutamate-rich WD repeat containing 1 Neighboring gene glutamate receptor, ionotropic, NMDA2D (epsilon 4) Neighboring gene predicted gene 45441 Neighboring gene synaptogyrin 4 Neighboring gene transmembrane protein 143

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ER retention sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables KDEL sequence binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    colocalizes_with COPI-coated vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cis-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cis-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cis-Golgi network ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum-Golgi intermediate compartment ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ER lumen protein-retaining receptor 1
    Names
    KDEL endoplasmic reticulum protein retention receptor 1
    KDEL receptor 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133950.2NP_598711.1  ER lumen protein-retaining receptor 1

      See identical proteins and their annotated locations for NP_598711.1

      Status: PROVISIONAL

      Source sequence(s)
      AC149053
      Consensus CDS
      CCDS21268.1
      UniProtKB/Swiss-Prot
      Q99JH8
      Related
      ENSMUSP00000002855.6, ENSMUST00000002855.14
      Conserved Domains (1) summary
      pfam00810
      Location:28169
      ER_lumen_recept; ER lumen protein retaining receptor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      45522264..45533150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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