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    Atg101 autophagy related 101 [ Mus musculus (house mouse) ]

    Gene ID: 68118, updated on 31-Jan-2019

    Summary

    Official Symbol
    Atg101provided by MGI
    Official Full Name
    autophagy related 101provided by MGI
    Primary source
    MGI:MGI:1915368
    See related
    Ensembl:ENSMUSG00000037204
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA407441; AU022967; 9430023L20Rik
    Expression
    Ubiquitous expression in liver adult (RPKM 17.4), colon adult (RPKM 16.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Atg101 in Genome Data Viewer
    Location:
    15; 15 F1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (101284301..101290947)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (101114732..101121365)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A330009N23 gene Neighboring gene GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein Neighboring gene nuclear receptor subfamily 4, group A, member 1 Neighboring gene RIKEN cDNA 6030408B16 gene Neighboring gene predicted gene, 41403 Neighboring gene keratin 80 Neighboring gene predicted gene, 35853 Neighboring gene microRNA 1941

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - other, organism-specific biosystem (from KEGG)
      Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Autophagy - other, conserved biosystem (from KEGG)
      Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Cellular responses to stress, organism-specific biosystem (from REACTOME)
      Cellular responses to stress, organism-specific biosystemcomputationally inferred pathway (not manually curated)
    • Longevity regulating pathway, organism-specific biosystem (from KEGG)
      Longevity regulating pathway, organism-specific biosystemRegulation of longevity depends on genetic and environmental factors. Caloric restriction (CR), that is limiting food intake, is recognized in mammals as the best characterized and most reproducible ...
    • Macroautophagy, organism-specific biosystem (from REACTOME)
      Macroautophagy, organism-specific biosystemcomputationally inferred pathway (not manually curated)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    autophagosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    autophagosome assembly ISO
    Inferred from Sequence Orthology
    more info
     
    autophagy IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    phagophore assembly site IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phagophore assembly site ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    autophagy-related protein 101

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026566.2NP_080842.1  autophagy-related protein 101

      See identical proteins and their annotated locations for NP_080842.1

      Status: PROVISIONAL

      Source sequence(s)
      AK007505
      Consensus CDS
      CCDS27849.1
      UniProtKB/Swiss-Prot
      Q9D8Z6
      Related
      ENSMUSP00000045474.6, ENSMUST00000048393.7
      Conserved Domains (1) summary
      pfam07855
      Location:9172
      ATG101; Autophagy-related protein 101

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      101284301..101290947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521310.3XP_006521373.1  autophagy-related protein 101 isoform X1

      See identical proteins and their annotated locations for XP_006521373.1

      UniProtKB/Swiss-Prot
      Q9D8Z6
      Conserved Domains (1) summary
      pfam07855
      Location:9172
      ATG101; Autophagy-related protein 101
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