Format

Send to:

Choose Destination
    • Showing Current items.

    Entr1 endosome associated trafficking regulator 1 [ Mus musculus (house mouse) ]

    Gene ID: 68112, updated on 21-Oct-2018

    Summary

    Official Symbol
    Entr1provided by MGI
    Official Full Name
    endosome associated trafficking regulator 1provided by MGI
    Primary source
    MGI:MGI:1915362
    See related
    Ensembl:ENSMUSG00000026927 Vega:OTTMUSG00000012776
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sdccag3; C330016H24Rik; C630038K21Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 146.9), CNS E18 (RPKM 52.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Entr1 in Genome Data Viewer
    Location:
    2; 2 A3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (26382798..26389316, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (26238320..26244836, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene caspase recruitment domain family, member 9 Neighboring gene small nuclear RNA activating complex, polypeptide 4 Neighboring gene peptidase (mitochondrial processing) alpha Neighboring gene inositol polyphosphate-5-phosphatase E Neighboring gene SEC16 homolog A, endoplasmic reticulum export factor Neighboring gene RIKEN cDNA 0610009E02 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of protein localization to cilium ISO
    Inferred from Sequence Orthology
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cytokinesis ISO
    Inferred from Sequence Orthology
    more info
     
    retrograde transport, endosome to plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell ISO
    Inferred from Sequence Orthology
    more info
     
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    early endosome ISO
    Inferred from Sequence Orthology
    more info
     
    endosome ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular ISO
    Inferred from Sequence Orthology
    more info
     
    midbody ISO
    Inferred from Sequence Orthology
    more info
     
    recycling endosome ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with retromer complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    endosome-associated-trafficking regulator 1; serologically defined colon cancer antigen 3 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085407.1NP_001078876.1  endosome-associated-trafficking regulator 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AK082787, AK163690, BY104480
      Consensus CDS
      CCDS50541.1
      UniProtKB/Swiss-Prot
      A2AIW0
      Related
      ENSMUSP00000028293.5, OTTMUSP00000013730, ENSMUST00000028293.11, OTTMUST00000030579
      Conserved Domains (1) summary
      pfam16034
      Location:147317
      JAKMIP_CC3; JAKMIP CC3 domain
    2. NM_001085408.1NP_001078877.1  endosome-associated-trafficking regulator 1 isoform 4

      See identical proteins and their annotated locations for NP_001078877.1

      Status: VALIDATED

      Source sequence(s)
      AK163690, AW743523, BY104480
      Consensus CDS
      CCDS50540.1
      UniProtKB/Swiss-Prot
      A2AIW0
      Related
      ENSMUSP00000077133.6, OTTMUSP00000013732, ENSMUST00000077983.12, OTTMUST00000030581
      Conserved Domains (1) summary
      pfam16034
      Location:124294
      JAKMIP_CC3; JAKMIP CC3 domain
    3. NM_026563.3NP_080839.2  endosome-associated-trafficking regulator 1 isoform 1

      See identical proteins and their annotated locations for NP_080839.2

      Status: VALIDATED

      Source sequence(s)
      AK014885, AK163690, BY104480
      Consensus CDS
      CCDS15803.2
      UniProtKB/Swiss-Prot
      A2AIW0
      Related
      ENSMUSP00000109737.3, OTTMUSP00000013731, ENSMUST00000114102.9, OTTMUST00000030580
      Conserved Domains (1) summary
      pfam16034
      Location:197367
      JAKMIP_CC3; JAKMIP CC3 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      26382798..26389316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006498261.1XP_006498324.1  serologically defined colon cancer antigen 3 homolog isoform X1

      Conserved Domains (1) summary
      pfam15898
      Location:269357
      PRKG1_interact; cGMP-dependent protein kinase interacting domain
    2. XM_006498262.3XP_006498325.1  serologically defined colon cancer antigen 3 homolog isoform X2

      UniProtKB/TrEMBL
      A2AIW3
      Related
      ENSMUSP00000109735.3, OTTMUSP00000013733, ENSMUST00000114100.9, OTTMUST00000030583
      Conserved Domains (1) summary
      pfam16034
      Location:174344
      JAKMIP_CC3; JAKMIP CC3 domain
    3. XM_006498263.1XP_006498326.1  serologically defined colon cancer antigen 3 homolog isoform X3

    RNA

    1. XR_374113.1 RNA Sequence

    2. XR_374114.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_030155.2: Suppressed sequence

      Description
      NM_030155.2: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript, and it contains a deletion compared to available sequence data that results in a frameshift.
    Support Center