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    Cibar1 CBY1 interacting BAR domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 68099, updated on 8-Jul-2021

    Summary

    Official Symbol
    Cibar1provided by MGI
    Official Full Name
    CBY1 interacting BAR domain containing 1provided by MGI
    Primary source
    MGI:MGI:1915349
    See related
    Ensembl:ENSMUSG00000028218
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam9; Fam92a; Fam92a1; 6720467C03Rik
    Expression
    Broad expression in CNS E18 (RPKM 13.6), CNS E11.5 (RPKM 11.7) and 21 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cibar1 in Genome Data Viewer
    Location:
    4; 4 A1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (12153142..12172047, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (12153142..12172023, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (12080869..12099162, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene poly A binding protein, cytoplasmic 4 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2 variant 2 pseudogene Neighboring gene RNA binding motif protein 12 B1 Neighboring gene predicted gene, 46845 Neighboring gene predicted gene, 46846 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables phospholipid binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in inner mitochondrial membrane organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in limb morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in limb morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in membrane organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in membrane tubulation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of smoothened signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centriole ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in ciliary basal body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in ciliary basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in ciliary base ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in ciliary transition zone IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in ciliary transition zone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial crista ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial inner membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein FAM92A
    Names
    family with sequence similarity 92, member A
    protein FAM92A1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310743.1NP_001297672.1  protein FAM92A isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site and lacks an alternate in-frame exon in the central coding region, compared to variant 1. The encoded isoform (2) is four amino acids shorter than isoform 1.
      Source sequence(s)
      AK013129, AK019574, AL929413, BE953978, CJ064072
      Consensus CDS
      CCDS80077.1
      UniProtKB/Swiss-Prot
      Q8BP22
      UniProtKB/TrEMBL
      Z4YJZ2
      Related
      ENSMUSP00000084284.5, ENSMUST00000087052.11
      Conserved Domains (1) summary
      cd07598
      Location:77283
      BAR_FAM92; The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)
    2. NM_026558.5NP_080834.3  protein FAM92A isoform 1

      See identical proteins and their annotated locations for NP_080834.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK078438, AL929413, BC055848, BE953978, CJ064072
      Consensus CDS
      CCDS51123.1
      UniProtKB/Swiss-Prot
      Q8BP22
      Related
      ENSMUSP00000103920.3, ENSMUST00000108285.9
      Conserved Domains (1) summary
      cd07598
      Location:77287
      BAR_FAM92; The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      12153142..12172047 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538210.5XP_006538273.1  protein FAM92A isoform X2

      Related
      ENSMUSP00000135961.2, ENSMUST00000177837.8
      Conserved Domains (1) summary
      cd07598
      Location:77290
      BAR_FAM92; The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)
    2. XM_006538209.5XP_006538272.1  protein FAM92A isoform X1

      Conserved Domains (1) summary
      cd07598
      Location:77294
      BAR_FAM92; The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)
    3. XM_006538212.5XP_006538275.1  protein FAM92A isoform X3

      Conserved Domains (1) summary
      cd07598
      Location:77257
      BAR_FAM92; The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

    RNA

    1. XR_003954999.2 RNA Sequence

    2. XR_003955000.2 RNA Sequence

    3. XR_001784190.3 RNA Sequence

    4. XR_004941950.1 RNA Sequence

    5. XR_881072.4 RNA Sequence

    6. XR_004941949.1 RNA Sequence

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