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    Ncbp2 nuclear cap binding protein subunit 2 [ Mus musculus (house mouse) ]

    Gene ID: 68092, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ncbp2provided by MGI
    Official Full Name
    nuclear cap binding protein subunit 2provided by MGI
    Primary source
    MGI:MGI:1915342
    See related
    Ensembl:ENSMUSG00000022774
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    20kDa; C79367; AA536802; AI843301; 5930413E18Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 49.7), CNS E14 (RPKM 29.8) and 19 other tissues See more
    Orthologs

    Genomic context

    See Ncbp2 in Genome Data Viewer
    Location:
    16; 16 B2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (31948546..31958472)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (31948632..31958558)

    Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class Z Neighboring gene RIKEN cDNA 0610012G03 gene Neighboring gene SUMO/sentrin specific peptidase 5 Neighboring gene 40S ribosomal protein S18 pseudogene Neighboring gene NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a), pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA 7-methylguanosine cap binding ISO
    Inferred from Sequence Orthology
    more info
     
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA cap binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    snRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    gene silencing by RNA IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA cis splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of mRNA 3'-end processing ISO
    Inferred from Sequence Orthology
    more info
     
    pre-mRNA cleavage required for polyadenylation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of translational initiation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    RNA cap binding complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    mRNA cap binding complex ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear cap binding complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear cap binding complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    nuclear cap-binding protein subunit 2
    Names
    20 kDa nuclear cap-binding protein
    CBP20
    NCBP 20 kDa subunit
    nuclear cap binding protein subunit 2, 20kDa

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026554.4NP_080830.1  nuclear cap-binding protein subunit 2

      See identical proteins and their annotated locations for NP_080830.1

      Status: VALIDATED

      Source sequence(s)
      AI843301, AK077841, AK147027, BY035864
      Consensus CDS
      CCDS28110.1
      UniProtKB/Swiss-Prot
      Q9CQ49
      Related
      ENSMUSP00000023460.6, ENSMUST00000023460.6
      Conserved Domains (1) summary
      cd12240
      Location:42119
      RRM_NCBP2; RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

      Range
      31948546..31958472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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