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    Rtraf RNA transcription, translation and transport factor [ Mus musculus (house mouse) ]

    Gene ID: 68045, updated on 31-Jan-2019

    Summary

    Official Symbol
    Rtrafprovided by MGI
    Official Full Name
    RNA transcription, translation and transport factorprovided by MGI
    Primary source
    MGI:MGI:1915295
    See related
    Ensembl:ENSMUSG00000021807
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2700060E02Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 51.4), CNS E11.5 (RPKM 47.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rtraf in Genome Data Viewer
    Location:
    14; 14 A3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (19811402..19823823, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (20630624..20643045, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene predicted gene 17030 Neighboring gene prostaglandin D receptor pseudogene Neighboring gene predicted gene, 29899 Neighboring gene nidogen 2 Neighboring gene DNA segment, Chr 14, ERATO Doi 670, expressed Neighboring gene guanine nucleotide binding protein (G protein), gamma 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    RNA polymerase II complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    negative regulation of protein kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    tRNA splicing, via endonucleolytic cleavage and ligation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    mitotic spindle ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    tRNA-splicing ligase complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RNA transcription, translation and transport factor protein
    Names
    UPF0568 protein C14orf166 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026528.3NP_080804.1  RNA transcription, translation and transport factor protein

      See identical proteins and their annotated locations for NP_080804.1

      Status: VALIDATED

      Source sequence(s)
      AK012486, AK160555
      Consensus CDS
      CCDS26839.1
      UniProtKB/Swiss-Prot
      Q9CQE8
      UniProtKB/TrEMBL
      Q4VA29
      Related
      ENSMUSP00000022341.5, ENSMUST00000022341.6
      Conserved Domains (1) summary
      pfam10036
      Location:5243
      RLL; Putative carnitine deficiency-associated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      19811402..19823823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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