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    Rbm42 RNA binding motif protein 42 [ Mus musculus (house mouse) ]

    Gene ID: 68035, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rbm42provided by MGI
    Official Full Name
    RNA binding motif protein 42provided by MGI
    Primary source
    MGI:MGI:1915285
    See related
    Ensembl:ENSMUSG00000036733 Vega:OTTMUSG00000026179
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700003D06Rik; 3100004P22Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 61.3), ovary adult (RPKM 42.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rbm42 in Genome Data Viewer
    Location:
    7; 7 B1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (30640995..30650228, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (31426014..31435247, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase, subunit 6B1 Neighboring gene ets variant 2 Neighboring gene HAUS augmin-like complex, subunit 5 Neighboring gene Pmis2, sperm specific protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...

    General gene information

    Potential readthrough

    Included gene: Haus5

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    negative regulation of mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    ribonucleoprotein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133693.2NP_598454.2  RNA-binding protein 42

      Status: VALIDATED

      Source sequence(s)
      AK013929, AK151000, BY350471, BY551742
      Consensus CDS
      CCDS52179.1
      UniProtKB/Swiss-Prot
      Q91V81
      Related
      ENSMUSP00000040005.6, OTTMUSP00000032155, ENSMUST00000042726.13, OTTMUST00000064685
      Conserved Domains (1) summary
      cd12383
      Location:373455
      RRM_RBM42; RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      30640995..30650228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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