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    Snrpg small nuclear ribonucleoprotein polypeptide G [ Mus musculus (house mouse) ]

    Gene ID: 68011, updated on 9-Sep-2018

    Summary

    Official Symbol
    Snrpgprovided by MGI
    Official Full Name
    small nuclear ribonucleoprotein polypeptide Gprovided by MGI
    Primary source
    MGI:MGI:1915261
    See related
    Ensembl:ENSMUSG00000057278 Vega:OTTMUSG00000056436
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SMG; sm-G; snRNP-G; AL022803; 2810024K17Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 172.5), liver E14 (RPKM 152.1) and 25 other tissues See more
    Orthologs

    Genomic context

    See Snrpg in Genome Data Viewer
    Location:
    6; 6 D1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (86371540..86378902)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (86321534..86328896)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene katanin p80 (WD40-containing) subunit B 1 pseudogene Neighboring gene family with sequence similarity 136, member A Neighboring gene prenylcysteine oxidase 1 Neighboring gene nuclear encoded tRNA glycine 4 (anticodon CCC)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U1 snRNP binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    P granule IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    SMN-Sm protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U1 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U1 snRNP ISO
    Inferred from Sequence Orthology
    more info
     
    U12-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U2 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U2-type prespliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U4 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U5 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    catalytic step 2 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    small nuclear ribonucleoprotein G
    Names
    sm protein G
    NP_080782.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026506.2NP_080782.1  small nuclear ribonucleoprotein G

      See identical proteins and their annotated locations for NP_080782.1

      Status: PROVISIONAL

      Source sequence(s)
      AK013235
      Consensus CDS
      CCDS39541.1
      UniProtKB/Swiss-Prot
      P62309
      Related
      ENSMUSP00000086987.5, OTTMUSP00000073154, ENSMUST00000089558.6, OTTMUST00000139414
      Conserved Domains (1) summary
      cd01719
      Location:574
      Sm_G; Sm protein G

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      86371540..86378902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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