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    Mrps11 mitochondrial ribosomal protein S11 [ Mus musculus (house mouse) ]

    Gene ID: 67994, updated on 31-Jan-2019

    Summary

    Official Symbol
    Mrps11provided by MGI
    Official Full Name
    mitochondrial ribosomal protein S11provided by MGI
    Primary source
    MGI:MGI:1915244
    See related
    Ensembl:ENSMUSG00000030611
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    S11mt; C79873; MRP-S11; 0710005I03Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 23.6), liver E14.5 (RPKM 18.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Mrps11 in Genome Data Viewer
    Location:
    7; 7 D2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (78783131..78792989)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (85928017..85937874)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 30892 Neighboring gene mitochondrial ribosomal protein L46 Neighboring gene de-etiolated homolog 1 (Arabidopsis) Neighboring gene microRNA 7-2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    mRNA 5'-UTR binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    small ribosomal subunit rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrial translation ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    ribosomal small subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    mitochondrial small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrial small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    mitochondrial small ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    mitochondrion HDA PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    28S ribosomal protein S11, mitochondrial

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360702.1NP_001347631.1  28S ribosomal protein S11, mitochondrial isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC156556, AK160207
      Conserved Domains (1) summary
      cl00332
      Location:8116
      Ribosomal_S11; Ribosomal protein S11
    2. NM_026498.2NP_080774.2  28S ribosomal protein S11, mitochondrial isoform 1

      See identical proteins and their annotated locations for NP_080774.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK152027, BB840699
      Consensus CDS
      CCDS21374.1
      UniProtKB/TrEMBL
      Q3U8Y1
      Related
      ENSMUSP00000032840.4, ENSMUST00000032840.4
      Conserved Domains (1) summary
      cl00332
      Location:82190
      Ribosomal_S11; Ribosomal protein S11

    RNA

    1. NR_153793.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice junction compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC156556

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      78783131..78792989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006541135.3XP_006541198.1  28S ribosomal protein S11, mitochondrial isoform X1

      Conserved Domains (1) summary
      cl00332
      Location:8116
      Ribosomal_S11; Ribosomal protein S11
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