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    Ccny cyclin Y [ Mus musculus (house mouse) ]

    Gene ID: 67974, updated on 22-Aug-2021

    Summary

    Official Symbol
    Ccnyprovided by MGI
    Official Full Name
    cyclin Yprovided by MGI
    Primary source
    MGI:MGI:1915224
    See related
    Ensembl:ENSMUSG00000024286
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700025H17Rik; 3110050L10Rik; 4631402G10Rik; 5730405I09Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 25.9), ovary adult (RPKM 20.4) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ccny in Genome Data Viewer
    Location:
    18; 18 A1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (9312304..9450188, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (9312304..9450154, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (9314042..9450148, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1632 Neighboring gene frizzled class receptor 8 Neighboring gene gap junction protein, delta 4 Neighboring gene predicted gene, 35458 Neighboring gene family with sequence similarity 76, member A pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables cyclin-dependent protein serine/threonine kinase regulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of cytoplasmic cyclin-dependent protein kinase holoenzyme complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cytoplasmic cyclin-dependent protein kinase holoenzyme complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cyclin-Y
    Names
    cyclin fold protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026484.4NP_080760.2  cyclin-Y

      See identical proteins and their annotated locations for NP_080760.2

      Status: VALIDATED

      Source sequence(s)
      AC108777, AK014201, AK014507, AK028696, AW048376
      Consensus CDS
      CCDS29050.1
      UniProtKB/Swiss-Prot
      Q8BGU5
      Related
      ENSMUSP00000050001.5, ENSMUST00000053917.6
      Conserved Domains (1) summary
      cd20540
      Location:166262
      CYCLIN_CCNY_like; cyclin box found in cyclin-Y (CCNY) family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      9312304..9450188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250583.2XP_030106443.1  cyclin-Y isoform X2

      Conserved Domains (1) summary
      pfam00134
      Location:101223
      Cyclin_N; Cyclin, N-terminal domain
    2. XM_030250584.2XP_030106444.1  cyclin-Y isoform X4

      Conserved Domains (1) summary
      cd20540
      Location:27123
      CYCLIN_CCNY_like; cyclin box found in cyclin-Y (CCNY) family
    3. XM_036161266.1XP_036017159.1  cyclin-Y isoform X4

      Conserved Domains (1) summary
      cd20540
      Location:27123
      CYCLIN_CCNY_like; cyclin box found in cyclin-Y (CCNY) family
    4. XM_030250582.1XP_030106442.1  cyclin-Y isoform X1

      Conserved Domains (1) summary
      pfam00134
      Location:89211
      Cyclin_N; Cyclin, N-terminal domain
    5. XM_036161265.1XP_036017158.1  cyclin-Y isoform X3

      Conserved Domains (1) summary
      cl40454
      Location:166193
      CYCLIN_SF; Cyclin box fold superfamily
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