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    Tubb6 tubulin, beta 6 class V [ Mus musculus (house mouse) ]

    Gene ID: 67951, updated on 2-Aug-2021

    Summary

    Official Symbol
    Tubb6provided by MGI
    Official Full Name
    tubulin, beta 6 class Vprovided by MGI
    Primary source
    MGI:MGI:1915201
    See related
    Ensembl:ENSMUSG00000001473
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BB220206; 2310057H16Rik
    Expression
    Broad expression in ovary adult (RPKM 169.4), bladder adult (RPKM 115.9) and 25 other tissues See more
    Orthologs
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    Genomic context

    See Tubb6 in Genome Data Viewer
    Location:
    18; 18 E1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (67523801..67535819)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (67390731..67402749)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (67550385..67562403)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30321 Neighboring gene inositol monophosphatase 2 Neighboring gene RIKEN cDNA B430212C06 gene Neighboring gene cell death-inducing DNA fragmentation factor, alpha subunit-like effector A Neighboring gene AFG3-like AAA ATPase 2 Neighboring gene PRELI domain containing 3A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mitotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in microtubule ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026473.2NP_080749.2  tubulin beta-6 chain

      See identical proteins and their annotated locations for NP_080749.2

      Status: PROVISIONAL

      Source sequence(s)
      BC008225
      Consensus CDS
      CCDS29321.1
      UniProtKB/Swiss-Prot
      Q922F4
      UniProtKB/TrEMBL
      Q3UMM1
      Related
      ENSMUSP00000001513.7, ENSMUST00000001513.8
      Conserved Domains (1) summary
      PLN00220
      Location:1431
      PLN00220; tubulin beta chain; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      67523801..67535819
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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