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    Rps27l ribosomal protein S27-like [ Mus musculus (house mouse) ]

    Gene ID: 67941, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rps27lprovided by MGI
    Official Full Name
    ribosomal protein S27-likeprovided by MGI
    Primary source
    MGI:MGI:1915191
    See related
    Ensembl:ENSMUSG00000036781
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810034D23Rik
    Expression
    Broad expression in placenta adult (RPKM 58.6), liver E14 (RPKM 50.1) and 22 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Rps27l in Genome Data Viewer
    Location:
    9; 9 C
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (66851906..66856804)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (66944624..66949522)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (66793925..66797316)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene aph1 homolog C, gamma secretase subunit Neighboring gene RAB8B, member RAS oncogene family Neighboring gene predicted gene, 40528 Neighboring gene lactamase, beta Neighboring gene predicted gene, 30639

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables cysteine-type endopeptidase activator activity involved in apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables translation activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    40S ribosomal protein S27-like
    Names
    40S ribosomal protein S27-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311101.2NP_001298030.1  40S ribosomal protein S27-like isoform 1

      See identical proteins and their annotated locations for NP_001298030.1

      Status: VALIDATED

      Source sequence(s)
      AC159741, AV040832, BE133731, BY088997
      Consensus CDS
      CCDS81028.1
      UniProtKB/TrEMBL
      D3YYB0
      Related
      ENSMUSP00000120518.2, ENSMUST00000127896.8
      Conserved Domains (1) summary
      cl00897
      Location:680
      Ribosomal_S27e; Ribosomal protein S27
    2. NM_001361106.1NP_001348035.1  40S ribosomal protein S27-like isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC159741
      Related
      ENSMUST00000143044.2
      Conserved Domains (1) summary
      PLN00209
      Location:2096
      PLN00209; ribosomal protein S27; Provisional
    3. NM_026467.5NP_080743.1  40S ribosomal protein S27-like isoform 2

      See identical proteins and their annotated locations for NP_080743.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon in the 3' coding region that results in a frame-shift compared to variant 1. It encodes isoform 2, which is shorter than and has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AC159741, AK007689, AV040832, BY088997
      Consensus CDS
      CCDS40673.1
      UniProtKB/Swiss-Prot
      Q6ZWY3
      Related
      ENSMUSP00000046016.8, ENSMUST00000040917.14
      Conserved Domains (1) summary
      PLN00209
      Location:682
      PLN00209; ribosomal protein S27; Provisional

    RNA

    1. NR_154464.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC159741

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      66851906..66856804
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017313541.2XP_017169030.1  40S ribosomal protein S27-like isoform X1

      Conserved Domains (1) summary
      cl00897
      Location:680
      Ribosomal_S27e; Ribosomal protein S27
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