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    Cmc1 COX assembly mitochondrial protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 67899, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cmc1provided by MGI
    Official Full Name
    COX assembly mitochondrial protein 1provided by MGI
    Primary source
    MGI:MGI:1915149
    See related
    Ensembl:ENSMUSG00000039163
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI596001; 2010110K16Rik; 2010312P05Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.5), bladder adult (RPKM 5.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cmc1 in Genome Data Viewer
    Location:
    9; 9 F3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (118063983..118150196, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (117974213..118059198, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene RNA binding motif, single stranded interacting protein Neighboring gene predicted gene, 39450 Neighboring gene uncharacterized LOC108167721 Neighboring gene 5-azacytidine induced gene 2 Neighboring gene predicted gene, 17399 Neighboring gene predicted gene, 33088

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    mitochondrion HDA PubMed 
    mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    COX assembly mitochondrial protein homolog
    Names
    cmc1p

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026442.3NP_080718.1  COX assembly mitochondrial protein homolog

      See identical proteins and their annotated locations for NP_080718.1

      Status: VALIDATED

      Source sequence(s)
      AC157475, AK020626, CJ170455
      Consensus CDS
      CCDS40800.1
      UniProtKB/Swiss-Prot
      Q9CPZ8
      Related
      ENSMUSP00000047904.9, ENSMUST00000044220.10
      Conserved Domains (1) summary
      pfam08583
      Location:1987
      Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      118063983..118150196 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242996.2XP_011241298.1  COX assembly mitochondrial protein homolog isoform X1

      Conserved Domains (1) summary
      pfam08583
      Location:1583
      Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
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