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    Fam45a family with sequence similarity 45, member A [ Mus musculus (house mouse) ]

    Gene ID: 67894, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fam45aprovided by MGI
    Official Full Name
    family with sequence similarity 45, member Aprovided by MGI
    Primary source
    MGI:MGI:1915144
    See related
    Ensembl:ENSMUSG00000024993
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810055E12Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 13.5), placenta adult (RPKM 12.7) and 24 other tissues See more
    Orthologs

    Genomic context

    See Fam45a in Genome Data Viewer
    Location:
    19; 19 D3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (60811449..60836235)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (60887473..60912135)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene nanos C2HC-type zinc finger 1 Neighboring gene eukaryotic translation initiation factor 3, subunit A Neighboring gene microRNA 3084-2 Neighboring gene small nucleolar RNA, H/ACA box 19 Neighboring gene sideroflexin 4 Neighboring gene peroxiredoxin 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001167829.2NP_001161301.1  protein FAM45A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK007867, AK145769, BY122265, BY381661, BY754601
      UniProtKB/Swiss-Prot
      Q9D8N2
      Conserved Domains (1) summary
      pfam08616
      Location:158257
      SPA; Stabilization of polarity axis
    2. NM_001347464.1NP_001334393.1  protein FAM45A isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC163019, BY381661
      Consensus CDS
      CCDS84460.1
      UniProtKB/TrEMBL
      Q3TH34
      Conserved Domains (1) summary
      pfam08616
      Location:37143
      SPA; Stabilization of polarity axis
    3. NM_001360619.1NP_001347548.1  protein FAM45A isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC163019, AK168474, BY381661
      Conserved Domains (1) summary
      pfam08616
      Location:37143
      SPA; Stabilization of polarity axis
    4. NM_001360620.1NP_001347549.1  protein FAM45A isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC163019, BY381661
      Conserved Domains (1) summary
      pfam08616
      Location:185291
      SPA; Stabilization of polarity axis
    5. NM_026437.4NP_080713.2  protein FAM45A isoform 1

      See identical proteins and their annotated locations for NP_080713.2

      Status: VALIDATED

      Source sequence(s)
      AK007867, AK145769, BY122265, BY381661, BY754601
      Consensus CDS
      CCDS29942.1
      UniProtKB/Swiss-Prot
      Q9D8N2
      Related
      ENSMUSP00000025957.8, ENSMUST00000025957.8
      Conserved Domains (1) summary
      pfam08616
      Location:158264
      SPA; Stabilization of polarity axis

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      60811449..60836235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527309.3XP_006527372.1  protein FAM45A isoform X2

      Conserved Domains (1) summary
      pfam08616
      Location:185291
      SPA; Stabilization of polarity axis
    2. XM_006527310.1XP_006527373.1  protein FAM45A isoform X1

      Conserved Domains (1) summary
      pfam08616
      Location:37143
      SPA; Stabilization of polarity axis
    3. XM_006527311.2XP_006527374.1  protein FAM45A isoform X1

      UniProtKB/TrEMBL
      Q3TH34
      Related
      ENSMUSP00000112839.1, ENSMUST00000119633.7
      Conserved Domains (1) summary
      pfam08616
      Location:37143
      SPA; Stabilization of polarity axis
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