Format

Send to:

Choose Destination
    • Showing Current items.

    Rpl4 ribosomal protein L4 [ Mus musculus (house mouse) ]

    Gene ID: 67891, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rpl4provided by MGI
    Official Full Name
    ribosomal protein L4provided by MGI
    Primary source
    MGI:MGI:1915141
    See related
    Ensembl:ENSMUSG00000032399 Vega:OTTMUSG00000062590
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2010004J23Rik
    Expression
    Ubiquitous expression in liver E14 (RPKM 606.0), CNS E11.5 (RPKM 541.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rpl4 in Genome Data Viewer
    Location:
    9; 9 C
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (64173387..64178562)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (64021194..64026369)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 39360 Neighboring gene lactase-like Neighboring gene zwilch kinetochore protein Neighboring gene small nucleolar RNA, C/D box 16A Neighboring gene small nuclear RNA activating complex, polypeptide 5 Neighboring gene mitogen-activated protein kinase kinase 1 Neighboring gene ubiquitin carboxyl-terminal esterase L4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    5S rRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    positive regulation of axon extension ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of axonogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    A band ISO
    Inferred from Sequence Orthology
    more info
     
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    postsynaptic density ISO
    Inferred from Sequence Orthology
    more info
     
    ribonucleoprotein complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    rough endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024212.4NP_077174.1  60S ribosomal protein L4

      See identical proteins and their annotated locations for NP_077174.1

      Status: PROVISIONAL

      Source sequence(s)
      BC132323
      Consensus CDS
      CCDS40667.1
      UniProtKB/Swiss-Prot
      Q9D8E6
      UniProtKB/TrEMBL
      Q564E8
      Related
      ENSMUSP00000034966.7, OTTMUSP00000079026, ENSMUST00000034966.8, OTTMUST00000152455
      Conserved Domains (3) summary
      PTZ00428
      Location:2352
      PTZ00428; 60S ribosomal protein L4; Provisional
      pfam14374
      Location:275348
      Ribos_L4_asso_C; 60S ribosomal protein L4 C-terminal domain
      cl00325
      Location:10265
      Ribosomal_L4; Ribosomal protein L4/L1 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      64173387..64178562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center