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    Tmem39a transmembrane protein 39a [ Mus musculus (house mouse) ]

    Gene ID: 67846, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tmem39aprovided by MGI
    Official Full Name
    transmembrane protein 39aprovided by MGI
    Primary source
    MGI:MGI:1915096
    See related
    Ensembl:ENSMUSG00000002845
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610033C09Rik
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 30.5), placenta adult (RPKM 15.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Tmem39a in Genome Data Viewer
    Location:
    16; 16 B4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (38379060..38412524)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (38558698..38592162)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (38562972..38591497)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane domain containing 1 Neighboring gene ubiquitin-like, containing PHD and RING finger domains, 1 pseudogene Neighboring gene predicted gene, 53953 Neighboring gene protein O-glucosyltransferase 1 Neighboring gene Rho GTPase activating protein 31 Neighboring gene predicted gene, 36482 Neighboring gene anaphase promoting complex subunit 10 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205286.1NP_001192215.1  transmembrane protein 39A isoform 1

      See identical proteins and their annotated locations for NP_001192215.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate 5' UTR exon, compared to variant 1. Variants 1 and 2 encode the same isoform (1).
      Source sequence(s)
      AK160576, AK169127
      Consensus CDS
      CCDS28171.1
      UniProtKB/Swiss-Prot
      Q9CYC3
      Related
      ENSMUSP00000132515.2, ENSMUST00000163884.8
      Conserved Domains (1) summary
      pfam10271
      Location:42475
      Tmp39; Putative transmembrane protein
    2. NM_001205287.1NP_001192216.1  transmembrane protein 39A isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an in-frame segment in the CDS, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      AK160576, AK169127
      Consensus CDS
      CCDS57029.1
      UniProtKB/Swiss-Prot
      Q9CYC3
      Related
      ENSMUSP00000126218.2, ENSMUST00000171687.8
      Conserved Domains (1) summary
      pfam10271
      Location:46407
      Tmp39; Putative transmembrane protein
    3. NM_026407.3NP_080683.2  transmembrane protein 39A isoform 1

      See identical proteins and their annotated locations for NP_080683.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) and variant 2 encode the same isoform (1).
      Source sequence(s)
      AK017817, AK133638, BY072316
      Consensus CDS
      CCDS28171.1
      UniProtKB/Swiss-Prot
      Q9CYC3
      Related
      ENSMUSP00000002924.9, ENSMUST00000002924.15
      Conserved Domains (1) summary
      pfam10271
      Location:42475
      Tmp39; Putative transmembrane protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      38379060..38412524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522496.4XP_006522559.1  transmembrane protein 39A isoform X1

      Conserved Domains (1) summary
      pfam10271
      Location:42447
      Tmp39; Putative transmembrane protein
    2. XM_006522497.4XP_006522560.1  transmembrane protein 39A isoform X2

      Conserved Domains (1) summary
      pfam10271
      Location:42311
      Tmp39; Putative transmembrane protein

    RNA

    1. XR_001781854.2 RNA Sequence

    2. XR_384596.4 RNA Sequence

    3. XR_003951823.1 RNA Sequence

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