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    Rer1 retention in endoplasmic reticulum sorting receptor 1 [ Mus musculus (house mouse) ]

    Gene ID: 67830, updated on 13-Nov-2018

    Summary

    Official Symbol
    Rer1provided by MGI
    Official Full Name
    retention in endoplasmic reticulum sorting receptor 1provided by MGI
    Primary source
    MGI:MGI:1915080
    See related
    Ensembl:ENSMUSG00000029048 Vega:OTTMUSG00000010595
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU043380; 1110060F11Rik; 5830454N22Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 58.8), bladder adult (RPKM 46.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rer1 in Genome Data Viewer
    Location:
    4; 4 E2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (155074109..155086381, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (154448221..154460406, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene phospholipase C, eta 2 Neighboring gene peroxisomal biogenesis factor 10 Neighboring gene MORN repeat containing 1 Neighboring gene ski sarcoma viral oncogene homolog (avian)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    acetylcholine receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    neuromuscular junction development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of protein localization to plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein retention in ER lumen IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    retrograde vesicle-mediated transport, Golgi to ER IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    retrograde vesicle-mediated transport, Golgi to ER ISO
    Inferred from Sequence Orthology
    more info
     
    skeletal muscle acetylcholine-gated channel clustering IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum-Golgi intermediate compartment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein RER1
    Names
    RER1 retention in endoplasmic reticulum 1 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362981.1NP_001349910.1  protein RER1

      Status: VALIDATED

      Source sequence(s)
      AL670413
      Conserved Domains (1) summary
      pfam03248
      Location:20185
      Rer1; Rer1 family
    2. NM_026395.2NP_080671.1  protein RER1

      See identical proteins and their annotated locations for NP_080671.1

      Status: VALIDATED

      Source sequence(s)
      AK002550, BM898853, BY164316
      Consensus CDS
      CCDS19022.1
      UniProtKB/Swiss-Prot
      Q9CQU3
      Related
      ENSMUSP00000030914.3, OTTMUSP00000011352, ENSMUST00000030914.3
      Conserved Domains (1) summary
      pfam03248
      Location:20185
      Rer1; Rer1 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      155074109..155086381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539132.2XP_006539195.1  protein RER1 isoform X1

      See identical proteins and their annotated locations for XP_006539195.1

      UniProtKB/Swiss-Prot
      Q9CQU3
      Conserved Domains (1) summary
      pfam03248
      Location:20185
      Rer1; Rer1 family
    2. XM_006539133.3XP_006539196.1  protein RER1 isoform X1

      See identical proteins and their annotated locations for XP_006539196.1

      UniProtKB/Swiss-Prot
      Q9CQU3
      Conserved Domains (1) summary
      pfam03248
      Location:20185
      Rer1; Rer1 family
    3. XM_006539131.3XP_006539194.1  protein RER1 isoform X1

      See identical proteins and their annotated locations for XP_006539194.1

      UniProtKB/Swiss-Prot
      Q9CQU3
      Conserved Domains (1) summary
      pfam03248
      Location:20185
      Rer1; Rer1 family
    4. XM_011250328.2XP_011248630.1  protein RER1 isoform X1

      See identical proteins and their annotated locations for XP_011248630.1

      UniProtKB/Swiss-Prot
      Q9CQU3
      Conserved Domains (1) summary
      pfam03248
      Location:20185
      Rer1; Rer1 family
    5. XM_006539130.2XP_006539193.1  protein RER1 isoform X1

      UniProtKB/Swiss-Prot
      Q9CQU3
      Conserved Domains (1) summary
      pfam03248
      Location:20185
      Rer1; Rer1 family
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