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    Ubxn4 UBX domain protein 4 [ Mus musculus (house mouse) ]

    Gene ID: 67812, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ubxn4provided by MGI
    Official Full Name
    UBX domain protein 4provided by MGI
    Primary source
    MGI:MGI:1915062
    See related
    Ensembl:ENSMUSG00000026353
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ubxd2; mKIAA0242; 1300013G12Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 17.2), CNS E14 (RPKM 13.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ubxn4 in Genome Data Viewer
    Location:
    1; 1 E3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (128171635..128207115)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (128243898..128279378)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (130140758..130175954)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene male-enhanced antigen 1 pseudogene Neighboring gene R3H domain containing 1 Neighboring gene microRNA 128-1 Neighboring gene predicted gene, 41949 Neighboring gene lactase Neighboring gene minichromosome maintenance complex component 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0242

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to unfolded protein IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in ubiquitin-dependent ERAD pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    UBX domain-containing protein 4
    Names
    UBX domain containing 2
    UBX domain-containing protein 2
    erasin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356529.1NP_001343458.1  UBX domain-containing protein 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC161809
      Conserved Domains (2) summary
      smart00166
      Location:319394
      UBX; Domain present in ubiquitin-regulatory proteins
      cl00388
      Location:4113
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    2. NM_026390.3NP_080666.2  UBX domain-containing protein 4 isoform 1

      See identical proteins and their annotated locations for NP_080666.2

      Status: VALIDATED

      Source sequence(s)
      AC161809, AK029431, AK075716, AK147795, AK148889, BQ745792
      Consensus CDS
      CCDS15251.1
      UniProtKB/Swiss-Prot
      Q8VCH8
      UniProtKB/TrEMBL
      A0A0R4J078
      Related
      ENSMUSP00000027592.4, ENSMUST00000027592.6
      Conserved Domains (2) summary
      smart00166
      Location:318393
      UBX; Domain present in ubiquitin-regulatory proteins
      cl00388
      Location:4113
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      128171635..128207115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006529831.2XP_006529894.1  UBX domain-containing protein 4 isoform X1

      Conserved Domains (2) summary
      cl00388
      Location:4113
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
      cl28922
      Location:318355
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    2. XM_017322239.1XP_017177728.1  UBX domain-containing protein 4 isoform X2

      Conserved Domains (2) summary
      cl00388
      Location:4113
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
      cl28922
      Location:317354
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
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