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    Zmym4 zinc finger, MYM-type 4 [ Mus musculus (house mouse) ]

    Gene ID: 67785, updated on 31-Jan-2019

    Summary

    Official Symbol
    Zmym4provided by MGI
    Official Full Name
    zinc finger, MYM-type 4provided by MGI
    Primary source
    MGI:MGI:1915035
    See related
    Ensembl:ENSMUSG00000042446
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MYM; CDIR; Zfp262; Znf262; AI480785; AW493829; mKIAA0425; D630001M21; 6330503C17Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 10.4), whole brain E14.5 (RPKM 8.1) and 24 other tissues See more
    Orthologs

    Genomic context

    See Zmym4 in Genome Data Viewer
    Location:
    4; 4 D2.2
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (126861819..126968844, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (126539063..126645167, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene transcription factor AP-2, epsilon Neighboring gene expressed sequence AU040320 Neighboring gene neurochondrin Neighboring gene splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene zinc finger, MYM domain containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cytoskeleton organization ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of cell morphogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of cell morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger MYM-type protein 4
    Names
    cell death inhibiting RNA
    zinc finger protein 262

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114399.1NP_001107871.1  zinc finger MYM-type protein 4 isoform 1

      See identical proteins and their annotated locations for NP_001107871.1

      Status: VALIDATED

      Source sequence(s)
      AK129137, AL606908, CO041541, CV563446
      Consensus CDS
      CCDS51303.1
      UniProtKB/Swiss-Prot
      A2A791
      Related
      ENSMUSP00000101714.2, ENSMUST00000106108.8
      Conserved Domains (3) summary
      smart00746
      Location:389429
      TRASH; metallochaperone-like domain
      pfam06467
      Location:478521
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:13571526
      DUF3504; Domain of unknown function (DUF3504)
    2. NM_001357201.1NP_001344130.1  zinc finger MYM-type protein 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AI639630, AL606908, AL606985, BU706482, CF533187, CF747333, CN526713, CO041541, CO430417, CV555767, CV558461, CV563446
      Conserved Domains (2) summary
      pfam06467
      Location:481521
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:12671436
      DUF3504; Domain of unknown function (DUF3504)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      126861819..126968844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320370.1XP_017175859.1  zinc finger MYM-type protein 4 isoform X3

      Conserved Domains (2) summary
      pfam06467
      Location:481521
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:12671436
      DUF3504; Domain of unknown function (DUF3504)
    2. XM_006503344.3XP_006503407.1  zinc finger MYM-type protein 4 isoform X2

      UniProtKB/Swiss-Prot
      A2A791
      Related
      ENSMUSP00000120813.1, ENSMUST00000135003.1
      Conserved Domains (3) summary
      smart00746
      Location:389429
      TRASH; metallochaperone-like domain
      pfam06467
      Location:478521
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:12681437
      DUF3504; Domain of unknown function (DUF3504)
    3. XM_006503343.3XP_006503406.1  zinc finger MYM-type protein 4 isoform X1

      Conserved Domains (3) summary
      smart00746
      Location:389429
      TRASH; metallochaperone-like domain
      pfam06467
      Location:478521
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:13561525
      DUF3504; Domain of unknown function (DUF3504)
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