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    Arpc5 actin related protein 2/3 complex, subunit 5 [ Mus musculus (house mouse) ]

    Gene ID: 67771, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arpc5provided by MGI
    Official Full Name
    actin related protein 2/3 complex, subunit 5provided by MGI
    Primary source
    MGI:MGI:1915021
    See related
    Ensembl:ENSMUSG00000008475
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p16-Arc; 5830443F10Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 98.7), CNS E18 (RPKM 74.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arpc5 in Genome Data Viewer
    Location:
    1; 1 G3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (152766542..152775580)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (154613672..154622710)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene ral guanine nucleotide dissociation stimulator,-like 1 Neighboring gene ornithine decarboxylase, structural 1 pseudogene Neighboring gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) Neighboring gene neutrophil cytosolic factor 2 Neighboring gene Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    actin binding IEA
    Inferred from Electronic Annotation
    more info
     
    actin filament binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    contributes_to actin filament binding ISO
    Inferred from Sequence Orthology
    more info
     
    structural constituent of cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    Arp2/3 complex-mediated actin nucleation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Arp2/3 complex-mediated actin nucleation ISO
    Inferred from Sequence Orthology
    more info
     
    actin filament network formation ISO
    Inferred from Sequence Orthology
    more info
     
    cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    lamellipodium organization ISO
    Inferred from Sequence Orthology
    more info
     
    maintenance of cell polarity ISO
    Inferred from Sequence Orthology
    more info
     
    microtubule organizing center localization ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of actin filament polymerization IEA
    Inferred from Electronic Annotation
    more info
     
    smooth muscle cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Arp2/3 protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Arp2/3 protein complex ISO
    Inferred from Sequence Orthology
    more info
     
    Arp2/3 protein complex TAS
    Traceable Author Statement
    more info
    PubMed 
    actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    endosome ISO
    Inferred from Sequence Orthology
    more info
     
    growth cone ISO
    Inferred from Sequence Orthology
    more info
     
    lamellipodium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuron projection ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    actin-related protein 2/3 complex subunit 5
    Names
    arp2/3 complex 16 kDa subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026369.2NP_080645.2  actin-related protein 2/3 complex subunit 5

      See identical proteins and their annotated locations for NP_080645.2

      Status: VALIDATED

      Source sequence(s)
      BC060143, CF170085
      Consensus CDS
      CCDS35739.1
      UniProtKB/Swiss-Prot
      Q9CPW4
      Related
      ENSMUSP00000076933.5, ENSMUST00000077755.10
      Conserved Domains (1) summary
      pfam04699
      Location:10149
      P16-Arc; ARP2/3 complex 16 kDa subunit (p16-Arc)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      152766542..152775580
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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