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    Gpatch2 G patch domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 67769, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gpatch2provided by MGI
    Official Full Name
    G patch domain containing 2provided by MGI
    Primary source
    MGI:MGI:1915019
    See related
    Ensembl:ENSMUSG00000039210
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gpat; Gpatc2; AI427714; AI447508; AW107440; AW491060; 5830433G22Rik; 5830436K05Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 4.4), CNS E11.5 (RPKM 2.6) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Gpatch2 in Genome Data Viewer
    Location:
    1; 1 H5
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (186946855..187103839)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (187214606..187371645)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (189039390..189175324)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 17 Neighboring gene RIKEN cDNA 1700007P06 gene Neighboring gene predicted gene 15509 Neighboring gene predicted gene, 51737 Neighboring gene predicted gene, 37896 Neighboring gene predicted gene, 36249

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    G patch domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357645.1NP_001344574.1  G patch domain-containing protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC107843, AC108796
      Consensus CDS
      CCDS87942.1
      Related
      ENSMUSP00000124407.2, ENSMUST00000160471.8
      Conserved Domains (1) summary
      pfam01585
      Location:444485
      G-patch; G-patch domain
    2. NM_001357646.1NP_001344575.1  G patch domain-containing protein 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC107843, AC108796
      Consensus CDS
      CCDS87941.1
      Related
      ENSMUSP00000106568.3, ENSMUST00000110943.9
      Conserved Domains (1) summary
      pfam01585
      Location:429471
      G-patch; G-patch domain
    3. NM_001357647.1NP_001344576.1  G patch domain-containing protein 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC107843
    4. NM_001357648.1NP_001344577.1  G patch domain-containing protein 2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC107843
      Consensus CDS
      CCDS87940.1
      Related
      ENSMUSP00000048979.6, ENSMUST00000044812.12
    5. NM_026367.4NP_080643.4  G patch domain-containing protein 2 isoform 1

      See identical proteins and their annotated locations for NP_080643.4

      Status: VALIDATED

      Source sequence(s)
      AC107843, AC108796
      Consensus CDS
      CCDS15605.1
      UniProtKB/Swiss-Prot
      Q7TQC7
      Related
      ENSMUSP00000065009.8, ENSMUST00000065573.14
      Conserved Domains (1) summary
      pfam01585
      Location:467510
      G-patch; G-patch domain

    RNA

    1. NR_151741.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC107843, AC108796

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      186946855..187103839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242477.2XP_030098337.1  G patch domain-containing protein 2 isoform X1

      Conserved Domains (1) summary
      pfam01585
      Location:444485
      G-patch; G-patch domain
    2. XM_030242487.1XP_030098347.1  G patch domain-containing protein 2 isoform X5

      Conserved Domains (1) summary
      pfam01585
      Location:216257
      G-patch; G-patch domain
    3. XM_006497199.5XP_006497262.1  G patch domain-containing protein 2 isoform X4

    4. XM_006497198.4XP_006497261.1  G patch domain-containing protein 2 isoform X2

    5. XM_036153167.1XP_036009060.1  G patch domain-containing protein 2 isoform X3

      Related
      ENSMUSP00000137801.2, ENSMUST00000160481.8
    6. XM_030242485.1XP_030098345.1  G patch domain-containing protein 2 isoform X5

      Conserved Domains (1) summary
      pfam01585
      Location:216257
      G-patch; G-patch domain

    RNA

    1. XR_003946457.2 RNA Sequence

    2. XR_004934119.1 RNA Sequence

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