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    Polr2g polymerase (RNA) II (DNA directed) polypeptide G [ Mus musculus (house mouse) ]

    Gene ID: 67710, updated on 9-Sep-2018

    Summary

    Official Symbol
    Polr2gprovided by MGI
    Official Full Name
    polymerase (RNA) II (DNA directed) polypeptide Gprovided by MGI
    Primary source
    MGI:MGI:1914960
    See related
    Ensembl:ENSMUSG00000071662
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RBP7; C76415; Rpo2-7l; 2410046K11Rik; A230108L04Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 43.0), placenta adult (RPKM 41.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Polr2g in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (8793129..8798557, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (8867619..8873047, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene transmembrane protein 179B Neighboring gene interferon induced transmembrane protein 2 pseudogene Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene zinc finger and BTB domain containing 3 Neighboring gene tetratricopeptide repeat domain 9C Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to DNA-directed 5'-3' RNA polymerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    single-stranded DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    single-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    translation initiation factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    nuclear-transcribed mRNA catabolic process, exonucleolytic IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of translational initiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    transcription initiation from RNA polymerase II promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA polymerase II, core complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA polymerase II, core complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    DNA-directed RNA polymerase II subunit RPB7
    Names
    DNA-directed RNA polymerase II subunit G
    RNA polymerase II subunit B7
    NP_080605.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026329.2NP_080605.1  DNA-directed RNA polymerase II subunit RPB7

      See identical proteins and their annotated locations for NP_080605.1

      Status: PROVISIONAL

      Source sequence(s)
      AK011627
      Consensus CDS
      CCDS29547.1
      UniProtKB/Swiss-Prot
      P62488
      Related
      ENSMUSP00000093980.3, ENSMUST00000096261.3
      Conserved Domains (1) summary
      cl04309
      Location:1169
      RNAP_Rpb7_N_like; RNAP_Rpb7_N_like: This conserved domain represents the N-terminal ribonucleoprotein (RNP) domain of the Rpb7 subunit of eukaryotic RNA polymerase (RNAP) II and its homologs, Rpa43 of eukaryotic RNAP I, Rpc25 of eukaryotic RNAP III, and RpoE (subunit E) ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      8793129..8798557 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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