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    Luc7l3 LUC7-like 3 (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 67684, updated on 31-Jan-2019

    Summary

    Official Symbol
    Luc7l3provided by MGI
    Official Full Name
    LUC7-like 3 (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1914934
    See related
    Ensembl:ENSMUSG00000020863
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Luc7a; 3300001P08Rik
    Expression
    Broad expression in CNS E14 (RPKM 59.6), CNS E11.5 (RPKM 55.5) and 18 other tissues See more
    Orthologs

    Genomic context

    See Luc7l3 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (94291137..94321985, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (94152453..94183225, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38956 Neighboring gene predicted gene, 21885 Neighboring gene ankyrin repeat domain 40 Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    RNA splicing ISO
    Inferred from Sequence Orthology
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA splice site selection IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    U1 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U2-type prespliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    luc7-like protein 3
    Names
    cisplatin resistance-associated overexpressed protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361573.1NP_001348502.1  luc7-like protein 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK019464, AK043494, AK151228
      Conserved Domains (1) summary
      pfam03194
      Location:4244
      LUC7; LUC7 N_terminus
    2. NM_001361574.1NP_001348503.1  luc7-like protein 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL645846, AL645965
      Conserved Domains (1) summary
      pfam03194
      Location:4244
      LUC7; LUC7 N_terminus
    3. NM_001361575.1NP_001348504.1  luc7-like protein 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL645846, AL645965
      Conserved Domains (1) summary
      pfam03194
      Location:4244
      LUC7; LUC7 N_terminus
    4. NM_026313.2NP_080589.1  luc7-like protein 3 isoform 1

      See identical proteins and their annotated locations for NP_080589.1

      Status: VALIDATED

      Source sequence(s)
      AL645846, AL645965
      Consensus CDS
      CCDS25252.1
      UniProtKB/Swiss-Prot
      Q5SUF2
      Related
      ENSMUSP00000021226.7, ENSMUST00000021226.13
      Conserved Domains (2) summary
      COG5200
      Location:4244
      LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
      pfam03194
      Location:4240
      LUC7; LUC7 N_terminus

    RNA

    1. NR_155068.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL645846, AL645965
    2. NR_155069.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL645846, AL645965

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      94291137..94321985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534011.3XP_006534074.1  luc7-like protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5SUF2
      Related
      ENSMUSP00000103451.2, ENSMUST00000107821.8
      Conserved Domains (1) summary
      pfam03194
      Location:4244
      LUC7; LUC7 N_terminus
    2. XM_006534010.3XP_006534073.1  luc7-like protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5SUF2
      Related
      ENSMUSP00000103450.1, ENSMUST00000107820.1
      Conserved Domains (1) summary
      pfam03194
      Location:4244
      LUC7; LUC7 N_terminus
    3. XM_017314721.1XP_017170210.1  luc7-like protein 3 isoform X2

    RNA

    1. XR_001780043.1 RNA Sequence

    2. XR_001780044.1 RNA Sequence

    3. XR_388511.3 RNA Sequence

    4. XR_001780045.1 RNA Sequence

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