Format

Send to:

Choose Destination
    • Showing Current items.

    Fgfr1op2 FGFR1 oncogene partner 2 [ Mus musculus (house mouse) ]

    Gene ID: 67529, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fgfr1op2provided by MGI
    Official Full Name
    FGFR1 oncogene partner 2provided by MGI
    Primary source
    MGI:MGI:1914779
    See related
    Ensembl:ENSMUSG00000040242
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500031J01Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 25.4), testis adult (RPKM 22.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fgfr1op2 in Genome Data Viewer
    Location:
    6; 6 G3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (146577635..146599198)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (146526433..146547720)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene inositol 1,4,5-triphosphate receptor 2 Neighboring gene predicted gene, 35707 Neighboring gene predicted gene, 35596 Neighboring gene integrator complex subunit 13 Neighboring gene transmembrane 7 superfamily member 3 Neighboring gene predicted pseudogene 6654 Neighboring gene mediator complex subunit 21

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    wound healing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    FGFR1 oncogene partner 2 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347513.1NP_001334442.1  FGFR1 oncogene partner 2 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the central coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AK151318, AK169380, BF466380
      Consensus CDS
      CCDS85186.1
      UniProtKB/Swiss-Prot
      Q9CRA9
      Conserved Domains (1) summary
      pfam05769
      Location:2183
      DUF837; Protein of unknown function (DUF837)
    2. NM_026218.2NP_080494.1  FGFR1 oncogene partner 2 homolog isoform 1

      See identical proteins and their annotated locations for NP_080494.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK004662, AK005320, AK050102, AK159805
      Consensus CDS
      CCDS39711.1
      UniProtKB/Swiss-Prot
      Q9CRA9
      Related
      ENSMUSP00000107292.2, ENSMUST00000111663.8
      Conserved Domains (1) summary
      pfam05769
      Location:2221
      DUF837; Protein of unknown function (DUF837)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      146577635..146599198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507094.2XP_006507157.1  FGFR1 oncogene partner 2 homolog isoform X1

      Related
      ENSMUSP00000098352.3, ENSMUST00000067404.12
      Conserved Domains (1) summary
      pfam05769
      Location:2183
      DUF837; Protein of unknown function (DUF837)

    Reference GRCm38.p4 NOD/ShiLtJ

    Genomic

    1. NT_166305.2 Reference GRCm38.p4 NOD/ShiLtJ

      Range
      3093236..3114548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center