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    Fgfr1op2 FGFR1 oncogene partner 2 [ Mus musculus (house mouse) ]

    Gene ID: 67529, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fgfr1op2provided by MGI
    Official Full Name
    FGFR1 oncogene partner 2provided by MGI
    Primary source
    MGI:MGI:1914779
    See related
    Ensembl:ENSMUSG00000040242
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500031J01Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 25.4), testis adult (RPKM 22.4) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Fgfr1op2 in Genome Data Viewer
    Location:
    6; 6 G3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (146479401..146500696)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (146577903..146599198)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (146526433..146547720)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53316 Neighboring gene integrator complex subunit 13 Neighboring gene transmembrane 7 superfamily member 3 Neighboring gene mediator complex subunit 21 Neighboring gene predicted pseudogene 6654

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in response to wounding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within wound healing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    FGFR1 oncogene partner 2 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347513.1NP_001334442.1  FGFR1 oncogene partner 2 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the central coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AK151318, AK169380, BF466380
      Consensus CDS
      CCDS85186.1
      UniProtKB/Swiss-Prot
      Q9CRA9
      Related
      ENSMUSP00000098352.4, ENSMUST00000067404.13
      Conserved Domains (1) summary
      pfam05769
      Location:2183
      SIKE; SIKE family
    2. NM_026218.2NP_080494.1  FGFR1 oncogene partner 2 homolog isoform 1

      See identical proteins and their annotated locations for NP_080494.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK004662, AK005320, AK050102, AK159805
      Consensus CDS
      CCDS39711.1
      UniProtKB/Swiss-Prot
      Q9CRA9
      Related
      ENSMUSP00000107292.3, ENSMUST00000111663.9
      Conserved Domains (1) summary
      pfam05769
      Location:2221
      SIKE; SIKE family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      146479401..146500696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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