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    Ccdc50 coiled-coil domain containing 50 [ Mus musculus (house mouse) ]

    Gene ID: 67501, updated on 22-Aug-2021

    Summary

    Official Symbol
    Ccdc50provided by MGI
    Official Full Name
    coiled-coil domain containing 50provided by MGI
    Primary source
    MGI:MGI:1914751
    See related
    Ensembl:ENSMUSG00000038127
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C3orf6
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 15.7), CNS E14 (RPKM 15.0) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ccdc50 in Genome Data Viewer
    Location:
    16 B2; 16 18.98 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (27205815..27270968)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (27387065..27452218)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (27389063..27452304)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene osteocrin Neighboring gene voltage-dependent anion channel 3 pseudogene Neighboring gene urotensin 2B Neighboring gene predicted gene, 32356 Neighboring gene predicted gene, 53942

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • 2610529H08Rik, 5730448P06Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables ubiquitin protein ligase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within sensory perception of sound ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in microtubule cytoskeleton IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 50
    Names
    protein Ymer

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025615.3NP_001020786.1  coiled-coil domain-containing protein 50 isoform 2

      See identical proteins and their annotated locations for NP_001020786.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the central coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
      Source sequence(s)
      AK147820, AK151672, AK162970, AK166690, BE948353, CA319864, CF734428, CJ045424
      Consensus CDS
      CCDS37306.1
      UniProtKB/Swiss-Prot
      Q810U5
      UniProtKB/TrEMBL
      Q3TNK7
      Related
      ENSMUSP00000093841.5, ENSMUST00000096127.11
      Conserved Domains (1) summary
      pfam15295
      Location:7126
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus
    2. NM_001289436.1NP_001276365.1  coiled-coil domain-containing protein 50 isoform 3

      See identical proteins and their annotated locations for NP_001276365.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in its 5' UTR and uses a downstream start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AK147820, AK151672, AK162970, AK166690, BE948353, CA319864, CF734428, CJ045424, CT010568
      UniProtKB/Swiss-Prot
      Q810U5
    3. NM_026202.4NP_080478.2  coiled-coil domain-containing protein 50 isoform 1

      See identical proteins and their annotated locations for NP_080478.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AK147820, AK151672, AK162970, AK166690, BE948353, CA319864, CF734428, CJ045424
      Consensus CDS
      CCDS37305.1
      UniProtKB/Swiss-Prot
      Q810U5
      UniProtKB/TrEMBL
      A6H6M8
      Related
      ENSMUSP00000097604.4, ENSMUST00000100026.10
      Conserved Domains (1) summary
      pfam15295
      Location:7126
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      27205815..27270968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011246002.3XP_011244304.1  coiled-coil domain-containing protein 50 isoform X3

      Related
      ENSMUSP00000159204.2, ENSMUST00000239351.2
      Conserved Domains (1) summary
      pfam15295
      Location:4128
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus
    2. XM_006522483.3XP_006522546.1  coiled-coil domain-containing protein 50 isoform X1

      Conserved Domains (1) summary
      pfam15295
      Location:6116
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus
    3. XM_030249249.2XP_030105109.1  coiled-coil domain-containing protein 50 isoform X2

      Conserved Domains (1) summary
      pfam15295
      Location:6116
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus
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