U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Gpatch1 G patch domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 67471, updated on 2-Nov-2024

    Summary

    Official Symbol
    Gpatch1provided by MGI
    Official Full Name
    G patch domain containing 1provided by MGI
    Primary source
    MGI:MGI:1914721
    See related
    Ensembl:ENSMUSG00000063808 AllianceGenome:MGI:1914721
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ECGP; Gpatc1; 1300003A17Rik
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleus. Is expressed in central nervous system and sensory organ. Orthologous to human GPATCH1 (G-patch domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 5.4), CNS E11.5 (RPKM 5.2) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Gpatch1 in Genome Data Viewer
    Location:
    7 B2; 7 21.27 cM
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (34975969..35017865, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (35238912..35318748, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38989 Neighboring gene nuclear encoded tRNA threonine 9 (anticodon AGT) Neighboring gene WD repeat domain 88 Neighboring gene STARR-seq mESC enhancer starr_18621 Neighboring gene STARR-positive B cell enhancer ABC_E11350 Neighboring gene rhophilin, Rho GTPase binding protein 2 Neighboring gene predicted gene, 51476 Neighboring gene Fanconi anemia core complex associated protein 24

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    part_of catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    G patch domain-containing protein 1
    Names
    evolutionarily conserved G-patch domain containing

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026181.1NP_080457.1  G patch domain-containing protein 1

      See identical proteins and their annotated locations for NP_080457.1

      Status: PROVISIONAL

      Source sequence(s)
      AK004868
      Consensus CDS
      CCDS21147.1
      UniProtKB/Swiss-Prot
      Q8R0V4, Q9DBM1
      UniProtKB/TrEMBL
      D6RET6
      Related
      ENSMUSP00000078632.6, ENSMUST00000079693.12
      Conserved Domains (2) summary
      pfam01585
      Location:154172
      G-patch; G-patch domain
      pfam07713
      Location:31116
      DUF1604; Protein of unknown function (DUF1604)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      34975969..35017865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)