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    Gpatch1 G patch domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 67471, updated on 12-Aug-2018

    Summary

    Official Symbol
    Gpatch1provided by MGI
    Official Full Name
    G patch domain containing 1provided by MGI
    Primary source
    MGI:MGI:1914721
    See related
    Ensembl:ENSMUSG00000063808 Vega:OTTMUSG00000030960
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ECGP; Gpatc1; 1300003A17Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 5.4), CNS E11.5 (RPKM 5.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Gpatch1 in Genome Data Viewer
    Location:
    7; 7 B2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (35276544..35318440, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (36061563..36103459, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene nuclear encoded tRNA threonine 9 (anticodon AGT) Neighboring gene predicted gene, 38989 Neighboring gene WD repeat domain 88 Neighboring gene rhophilin, Rho GTPase binding protein 2 Neighboring gene Fanconi anemia core complex associated protein 24 Neighboring gene centrosomal protein 89 Neighboring gene predicted gene, 42378

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    G patch domain-containing protein 1
    Names
    evolutionarily conserved G-patch domain containing

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026181.1NP_080457.1  G patch domain-containing protein 1

      See identical proteins and their annotated locations for NP_080457.1

      Status: PROVISIONAL

      Source sequence(s)
      AK004868
      Consensus CDS
      CCDS21147.1
      UniProtKB/Swiss-Prot
      Q9DBM1
      Related
      ENSMUSP00000078632.5, OTTMUSP00000040392, ENSMUST00000079693.11, OTTMUST00000076659
      Conserved Domains (2) summary
      pfam01585
      Location:154172
      G-patch; G-patch domain
      pfam07713
      Location:31116
      DUF1604; Protein of unknown function (DUF1604)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      35276544..35318440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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